Changeset 2924 for branches/0.10-stable


Ignore:
Timestamp:
Dec 19, 2012, 3:12:59 PM (9 years ago)
Author:
Peter
Message:

cater for older samtools without support for '-o' switch

File:
1 edited

Legend:

Unmodified
Added
Removed
  • branches/0.10-stable/test/Makefile.am

    r2902 r2924  
    263263if HAVE_SAMTOOLS
    264264test/data/foo.bam: test/data/foo.sam test/data/.dirstamp
    265   $(SAMTOOLS) view -Sb $(srcdir)/test/data/foo.sam -o $@
     265  $(SAMTOOLS) view -Sb $(srcdir)/test/data/foo.sam > $@-t && mv $@-t $@
    266266
    267267test/data/foo.sorted.bam: test/data/foo.bam
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