Changeset 2972 for branches/0.10-stable/m4/yat_check_libbam.m4

Timestamp:

Jan 26, 2013, 7:53:56 AM (10 years ago)

Author:

Peter

Message:

refs #745. Implement a workaround when bam_nt16_rev_table is not
available in -lbam.

File:

• branches/0.10-stable/m4/yat_check_libbam.m4 (modified) (2 diffs)

branches/0.10-stable/m4/yat_check_libbam.m4

@@ -1 +1 @@
 ## $Id$
 #
-# serial 1 (yat 0.10)
+# serial 2 (yat 0.10.2)
 #
 #
-#   Copyright (C) 2012 Peter Johansson
+#   Copyright (C) 2012, 2013 Peter Johansson
 #
 #   This file is part of the yat library, http://dev.thep.lu.se/yat
@@ -78 +78 @@
 LIBS=$save_LIBS
 ]) # YAT_LINK_BAM_IFELSE
+
+# YAT_BAM_NT16_REV_TABLE
+# ====================================================================
+# Check if global variable bam_nt16_rev_table is available in
+# -lbam. If found call AC_DEFINE(HAVE_BAM_NT16_REV_TABLE).
+AC_DEFUN([YAT_BAM_NT16_REV_TABLE],
+[
+AC_MSG_CHECKING([for bam_nt16_rev_table])
+AC_LINK_IFELSE([AC_LANG_PROGRAM(
+                 [@%:@if HAVE_BAM_H
+                  @%:@ include <bam.h>
+                  @%:@elif HAVE_BAM_BAM_H
+                  @%:@ include <bam/bam.h>
+                  @%:@elif HAVE_SAMTOOLS_BAM_H
+                  @%:@ include <samtools/bam.h>
+                  @%:@endif
+                 ],[
+                  char c = bam_nt16_rev_table@<:@7@:>@;
+                 ])
+               ],[
+                 AC_MSG_RESULT([yes])
+                 AC_DEFINE([HAVE_BAM_NT16_REV_TABLE], [1],
+                           [Define to 1 if libbam contains bam_nt16_rev_table])
+               ],[
+                 AC_MSG_RESULT([no])
+               ])
+]) # YAT_BAM_NT16_REV_TABLE