Changeset 3027

Timestamp:

Apr 8, 2013, 6:31:56 AM (9 years ago)

Author:

Peter

Message:

don't mention cigar in docs when function is called alignment

File:

• trunk/yat/utility/Aligner.h (modified) (1 diff)

trunk/yat/utility/Aligner.h

@@ -115 +115 @@
 
     /**
-       \brief access cigar element i, j
-
-       If, for example, cigar(i,j) returned Aligner::diagonal, implies
-       that score(i,j) was maximized as score(i-1,j-1) + dot(i-1,
-       j-1), which in turn implies that element i-1 in first sequence
+       If, for example, alignment(i,j) returns Aligner::diagonal,
+       implies that score(i,j) was maximized as score(i-1,j-1) +
+       dot(i-1, j-1), in other words, element i-1 in first sequence
        was aligned with element j-1 in second sequence.
     */