Changeset 3027


Ignore:
Timestamp:
Apr 8, 2013, 6:31:56 AM (9 years ago)
Author:
Peter
Message:

don't mention cigar in docs when function is called alignment

File:
1 edited

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  • trunk/yat/utility/Aligner.h

    r2986 r3027  
    115115
    116116    /**
    117        \brief access cigar element i, j
    118 
    119        If, for example, cigar(i,j) returned Aligner::diagonal, implies
    120        that score(i,j) was maximized as score(i-1,j-1) + dot(i-1,
    121        j-1), which in turn implies that element i-1 in first sequence
     117       If, for example, alignment(i,j) returns Aligner::diagonal,
     118       implies that score(i,j) was maximized as score(i-1,j-1) +
     119       dot(i-1, j-1), in other words, element i-1 in first sequence
    122120       was aligned with element j-1 in second sequence.
    123121    */
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