Changeset 3028 for trunk/yat/omic/BamRead.cc

Timestamp:

Apr 21, 2013, 2:37:31 AM (10 years ago)

Author:

Peter

Message:

functions to access, append, and remove aux field. refs #746

File:

• trunk/yat/omic/BamRead.cc (modified) (2 diffs)

trunk/yat/omic/BamRead.cc

@@ -1 @@
-
 // $Id$
 
@@ -70 +69 @@
   const uint8_t* BamRead::aux(void) const
   {
+    assert(bam_);
     return bam1_aux(bam_);
+  }
+
+
+  const uint8_t* BamRead::aux(const char tag[2]) const
+  {
+    assert(bam_);
+    return bam_aux_get(bam_, tag);
+  }
+
+
+  void BamRead::aux_append(const char tag[2], char type,int len,uint8_t* data)
+  {
+    assert(bam_);
+    bam_aux_append(bam_, tag, type, len, data);
+  }
+
+
+  void BamRead::aux_del(const char tag[2])
+  {
+    assert(bam_);
+    bam_aux_del(bam_, bam_aux_get(bam_, tag));
+  }
+
+
+  int BamRead::aux_size(void) const
+  {
+    assert(bam_);
+    return bam_->l_aux;
   }