Changeset 3042


Ignore:
Timestamp:
Jun 8, 2013, 3:06:56 PM (8 years ago)
Author:
Peter
Message:

make rules for samtools more silent-rules friendly

File:
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/test/Makefile.am

    r3041 r3042  
    274274if HAVE_SAMTOOLS
    275275test/data/foo.bam: test/data/foo.sam test/data/.dirstamp Makefile
    276   $(SAMTOOLS) view -Sb $(srcdir)/test/data/foo.sam > $@-t && mv $@-t $@
     276  $(AM_V_GEN)
     277  $(AM_V_at)$(SAMTOOLS) view -Sb $(srcdir)/test/data/foo.sam \
     278  > $@-t && mv $@-t $@
    277279
    278280test/data/foo.sorted.bam: test/data/foo.bam
    279   $(SAMTOOLS) sort test/data/foo.bam test/data/foo.sorted
     281  $(AM_V_GEN)
     282  $(AM_V_at)$(SAMTOOLS) sort test/data/foo.bam test/data/foo.sorted
    280283
    281284test/data/foo.sorted.bam.bai: test/data/foo.sorted.bam
    282   $(SAMTOOLS) index test/data/foo.sorted.bam
     285  $(AM_V_GEN)
     286  $(AM_V_at)$(SAMTOOLS) index test/data/foo.sorted.bam
    283287else
    284288test/data/foo.sorted.bam: test/data/.dirstamp
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