Changeset 3166

Timestamp:

Jan 17, 2014, 3:23:05 AM (9 years ago)

Author:

Peter

Message:

throw OutBamFile::error when OutBamFile::write fails. closes #778

Location:

trunk/yat/omic

Files:

• BamFile.cc (modified) (1 diff)
• BamFile.h (modified) (1 diff)

trunk/yat/omic/BamFile.cc

@@ -163 +163 @@
   {
     if (samwrite(sf_, read.bam_)<=0) {
-      // FIXME if wanted perhaps we should throw an OutBamFile::error
-      // instead that can hold \a read
-      throw utility::runtime_error("OutBamFile::write failed");
+      throw OutBamFile::error(read);
     }
   }
 
+
+  // OutBamFile::error
+
+  OutBamFile::error::error(const BamRead& r)
+    : IO_error(""), read_(r) {}
+
+
+  OutBamFile::error::~error(void) throw() {}
+
+
+  const BamRead& OutBamFile::error::read(void) const
+  { return read_; }
+
 }}}

trunk/yat/omic/BamFile.h

@@ -235 +235 @@
        \brief write a read to output file
 
-       \throw utility::runtime_error if write failed
+       \throw OutBamFile::error if write failed
+
+       \since yat 0.12
      */
     void write(const BamRead& read);
+
+    /**
+       \brief Error thrown from OutBamFile::write(const BamRead&) at failure
+     */
+    class error : public utility::IO_error
+    {
+    public:
+      /// \brief Constructor
+      error(const BamRead&);
+      /// \brief Destructor
+      // has to be throw() since base class destructor is
+      virtual ~error(void) throw();
+      /**
+         \return bam read that failed
+       */
+      const BamRead& read(void) const;
+    private:
+      BamRead read_;
+    }; // end of class error
+
   private:
   };