Ignore:
Timestamp:
May 3, 2014, 5:23:41 PM (9 years ago)
Author:
Peter
Message:

interface of new convenience class SmithWaterman? that uses the Aligner class and provides more convenient things like slightly different CIGAR and position on the reference etc.

File:
1 edited

Legend:

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  • trunk/yat/utility/Makefile.am

    r3190 r3204  
    4545  yat/utility/split.cc \
    4646  yat/utility/stl_utility.cc \
     47  yat/utility/SmithWaterman.cc \
    4748  yat/utility/SVD.cc \
    4849  yat/utility/TypeInfo.cc \
    … …  
    9798  $(srcdir)/yat/utility/SegmentTree.h \
    9899  $(srcdir)/yat/utility/SmartPtr.h \
     100  $(srcdir)/yat/utility/SmithWaterman.h \
    99101  $(srcdir)/yat/utility/sort_index.h \
    100102  $(srcdir)/yat/utility/split.h \
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