Changeset 3209

Timestamp:

May 4, 2014, 3:52:34 PM (9 years ago)

Author:

Peter

Message:

add missing source file and fix compilation error --without-samtools

Location:

trunk/test

Files:

• Suite.cc (modified) (1 diff)
• bam_iterator.cc (modified) (1 diff)
• bam_pair_iterator.cc (modified) (2 diffs)
• smith_waterman.cc (added)

trunk/test/Suite.cc

@@ -47 +47 @@
 #ifndef YAT_HAVE_LIBBAM
       out() << "no libbam\n";
-      return EXIT_SKIP;
+      exit (EXIT_SKIP);
 #endif
 #ifndef HAVE_SAMTOOLS
       out() << "no samtools\n";
-      return EXIT_SKIP;
+      exit (EXIT_SKIP);
 #endif
     }

trunk/test/bam_iterator.cc

@@ -144 +144 @@
 
 }
+#else
+void test1(test::Suite& suite) {}
 #endif

trunk/test/bam_pair_iterator.cc

@@ -33 +33 @@
 
 using namespace theplu::yat;
+#ifdef YAT_HAVE_LIBBAM
 using namespace omic;
+#endif
 
 void test1(test::Suite& suite);
@@ -50 +52 @@
 }
 
-using namespace omic;
 
 void test1(test::Suite& suite)