Changeset 3325

Timestamp:

Oct 7, 2014, 3:44:54 AM (8 years ago)

Author:

Peter

Message:

new functions phred and phred_inv that calculate phred scaled probability and its inverse, respectively.

Location:

trunk

Files:

• test/Makefile.am (modified) (1 diff)
• test/phred.cc (added)
• yat/omic/Makefile.am (modified) (2 diffs)
• yat/omic/phred.cc (added)
• yat/omic/phred.h (added)

trunk/test/Makefile.am

@@ -71 +71 @@
   test/ostream_iterator.test \
   test/pca.test \
+  test/phred.test \
   test/pileup.test \
   test/queue.test test/queue2.test \

trunk/yat/omic/Makefile.am

@@ -33 +33 @@
 yat_libyat_la_SOURCES += yat/omic/GFF2.cc
 yat_libyat_la_SOURCES += yat/omic/GFF3.cc
+yat_libyat_la_SOURCES += yat/omic/phred.cc
 
 nobase_include_HEADERS += $(srcdir)/yat/omic/algorithm.h
@@ -51 +52 @@
 nobase_include_HEADERS += $(srcdir)/yat/omic/GFF3.h
 nobase_include_HEADERS += $(srcdir)/yat/omic/Pileup.h
+nobase_include_HEADERS += $(srcdir)/yat/omic/phred.h