Changeset 3336 for trunk/yat/omic/Pileup.h

Timestamp:

Oct 25, 2014, 1:27:45 AM (7 years ago)

Author:

Peter

Message:

closes #816

File:

• trunk/yat/omic/Pileup.h (modified) (2 diffs)

trunk/yat/omic/Pileup.h

@@ -24 +24 @@
 
 #include "BamRead.h"
-#include "CigarIterator.h"
-
+
+#include "yat/utility/CigarIterator.h"
 #include "yat/utility/yat_assert.h"
 
@@ -137 +137 @@
       // index of base pointed to
       size_t qpos_;
-      CigarIterator cigar_;
+      yat::utility::CigarIterator<const uint32_t*> cigar_;
       size_t skip_;
       // return 0, 1, 2, or 3 see bam_cigar_type in yat/utility/Cigar.h