Changeset 3338


Ignore:
Timestamp:
Nov 5, 2014, 1:10:16 PM (7 years ago)
Author:
Peter
Message:

closes #819. Fixes docs.

File:
1 edited

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  • branches/0.12-stable/yat/utility/SmithWaterman.h

    r3205 r3338  
    9696       Calculate a dot-matrix of size query_end-query_begin X
    9797       reference_end-reference_begin where the element ij is 1.0 if
    98        query_begin[i] == reference_begin[j] and -mismatch otherwise.
     98       reference_begin[i] == query_begin[j] and -mismatch otherwise.
    9999     */
    100100    template<typename RandomAccessIterator1, typename RandomAccessIterator2>
    101     double operator()(RandomAccessIterator1 query_begin,
    102                       RandomAccessIterator1 query_end,
    103                       RandomAccessIterator2 reference_begin,
    104                       RandomAccessIterator2 reference_end,
     101    double operator()(RandomAccessIterator1 reference_begin,
     102                      RandomAccessIterator1 reference_end,
     103                      RandomAccessIterator2 query_begin,
     104                      RandomAccessIterator2 query_end,
    105105                      double mismatch=0);
    106106
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