Changeset 3338 for branches/0.12-stable/yat/utility/SmithWaterman.h

Timestamp:

Nov 5, 2014, 1:10:16 PM (8 years ago)

Author:

Peter

Message:

closes #819. Fixes docs.

File:

• branches/0.12-stable/yat/utility/SmithWaterman.h (modified) (1 diff)

branches/0.12-stable/yat/utility/SmithWaterman.h

@@ -96 +96 @@
        Calculate a dot-matrix of size query_end-query_begin X
        reference_end-reference_begin where the element ij is 1.0 if
-       query_begin[i] == reference_begin[j] and -mismatch otherwise.
+       reference_begin[i] == query_begin[j] and -mismatch otherwise.
      */
     template<typename RandomAccessIterator1, typename RandomAccessIterator2>
-    double operator()(RandomAccessIterator1 query_begin,
-                      RandomAccessIterator1 query_end,
-                      RandomAccessIterator2 reference_begin,
-                      RandomAccessIterator2 reference_end,
+    double operator()(RandomAccessIterator1 reference_begin,
+                      RandomAccessIterator1 reference_end,
+                      RandomAccessIterator2 query_begin,
+                      RandomAccessIterator2 query_end,
                       double mismatch=0);