Changeset 3338 for branches/0.12-stable/yat/utility/SmithWaterman.h
- Timestamp:
- Nov 5, 2014, 1:10:16 PM (8 years ago)
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branches/0.12-stable/yat/utility/SmithWaterman.h
r3205 r3338 96 96 Calculate a dot-matrix of size query_end-query_begin X 97 97 reference_end-reference_begin where the element ij is 1.0 if 98 query_begin[i] == reference_begin[j] and -mismatch otherwise.98 reference_begin[i] == query_begin[j] and -mismatch otherwise. 99 99 */ 100 100 template<typename RandomAccessIterator1, typename RandomAccessIterator2> 101 double operator()(RandomAccessIterator1 query_begin,102 RandomAccessIterator1 query_end,103 RandomAccessIterator2 reference_begin,104 RandomAccessIterator2 reference_end,101 double operator()(RandomAccessIterator1 reference_begin, 102 RandomAccessIterator1 reference_end, 103 RandomAccessIterator2 query_begin, 104 RandomAccessIterator2 query_end, 105 105 double mismatch=0); 106 106
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