Changeset 3339

Timestamp:

Nov 6, 2014, 12:43:01 AM (8 years ago)

Author:

Peter

Message:

Fix problem that Aligner::member_ is not cleared to 'none' before
aligning, which means that the beginning of alignment could be
incorrect. Fixes #820.

Location:

branches/0.12-stable

Files:

• test/Makefile.am (modified) (1 diff)
• test/cigar2.cc (added)
• yat/utility/Aligner.cc (modified) (1 diff)

branches/0.12-stable/test/Makefile.am

@@ -48 +48 @@
   test/bam_pair_iterator.test \
   test/cigar.test \
+  test/cigar2.test \
   test/codon.test test/commandline.test \
   test/concept.test \

branches/0.12-stable/yat/utility/Aligner.cc

@@ -79 +79 @@
 
     columns_ = x.columns();
-    alignment_.resize(columns_*x.rows(), none);
+    alignment_.assign(columns_*x.rows(), none);
 
     for (size_t i=1; i<x.rows(); ++i)