Changeset 3342 for trunk/yat/utility/SmithWaterman.h

Timestamp:

Nov 6, 2014, 6:26:24 AM (8 years ago)

Author:

Peter

Message:

merge 0.12.2 into trunk

Location:

trunk

Files:

• . (modified) (1 prop)
• yat/utility/SmithWaterman.h (modified) (1 diff)

trunk/yat/utility/SmithWaterman.h

@@ -96 +96 @@
        Calculate a dot-matrix of size query_end-query_begin X
        reference_end-reference_begin where the element ij is 1.0 if
-       query_begin[i] == reference_begin[j] and -mismatch otherwise.
+       reference_begin[i] == query_begin[j] and -mismatch otherwise.
      */
     template<typename RandomAccessIterator1, typename RandomAccessIterator2>
-    double operator()(RandomAccessIterator1 query_begin,
-                      RandomAccessIterator1 query_end,
-                      RandomAccessIterator2 reference_begin,
-                      RandomAccessIterator2 reference_end,
+    double operator()(RandomAccessIterator1 reference_begin,
+                      RandomAccessIterator1 reference_end,
+                      RandomAccessIterator2 query_begin,
+                      RandomAccessIterator2 query_end,
                       double mismatch=0);