Ignore:
Timestamp:
Nov 6, 2014, 6:26:24 AM (8 years ago)
Author:
Peter
Message:

merge 0.12.2 into trunk

Location:
trunk
Files:
2 edited

Legend:

Unmodified
Added
Removed
  • trunk

  • trunk/yat/utility/SmithWaterman.h

    r3205 r3342  
    9696       Calculate a dot-matrix of size query_end-query_begin X
    9797       reference_end-reference_begin where the element ij is 1.0 if
    98        query_begin[i] == reference_begin[j] and -mismatch otherwise.
     98       reference_begin[i] == query_begin[j] and -mismatch otherwise.
    9999     */
    100100    template<typename RandomAccessIterator1, typename RandomAccessIterator2>
    101     double operator()(RandomAccessIterator1 query_begin,
    102                       RandomAccessIterator1 query_end,
    103                       RandomAccessIterator2 reference_begin,
    104                       RandomAccessIterator2 reference_end,
     101    double operator()(RandomAccessIterator1 reference_begin,
     102                      RandomAccessIterator1 reference_end,
     103                      RandomAccessIterator2 query_begin,
     104                      RandomAccessIterator2 query_end,
    105105                      double mismatch=0);
    106106
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