Changeset 3410 for trunk/test/bam_header.cc

Timestamp:

Apr 22, 2015, 1:05:43 AM (8 years ago)

Author:

Peter

Message:

add two new functions read_group and program_group to access data in BamHeader?. closes #817

File:

• trunk/test/bam_header.cc (modified) (1 diff)

trunk/test/bam_header.cc

@@ -125 +125 @@
   }
 
+  suite.err() << hdr.text() << "\n";
+  try {
+    std::string sample_name = hdr.read_group("foo", "SM");
+    if (sample_name!="Tumour") {
+      suite.add(false);
+      suite.err() << "error: incorrect sample name: '" << sample_name << "'\n";
+    }
+
+    std::string bwa_version = hdr.program_group("bwa", "VN");
+    if (bwa_version!="0.6.1-r104") {
+      suite.add(false);
+      suite.err() << "error: incorrect bwa_version: '" << bwa_version << "'\n";
+    }
+  }
+  catch (std::runtime_error& e) {
+    suite.add(false);
+    suite.err() << "error: exception: " << e.what() << "\n";
+  }
 #endif
 }