Changeset 3423


Ignore:
Timestamp:
Sep 16, 2015, 1:40:55 AM (6 years ago)
Author:
Peter
Message:

merge from 0.13-stable branch. Avoid compiler warnings also in trunk.

Location:
trunk
Files:
5 edited

Legend:

Unmodified
Added
Removed
  • trunk

  • trunk/README.developer

    r3417 r3423  
    153153
    154154
     155== Avoid compiler warnings from hts.h ==
     156
     157When compiling with GCC in C++98 mode with -pedantic (as is
     158recommended under development) the file 'htslib/hts.h' will cause
     159warnings if it's not installed as system header. You can avoid this
     160warning by replacing CPPFLAGS=-I/path/to/htslib with
     161CPPFLAGS="-isystem /path/to/htslib".
     162
    155163= Release Procedure =
    156164
  • trunk/test/scheduler3.cc

    r3405 r3423  
    3232
    3333#include <boost/shared_ptr.hpp>
    34 #include <boost/exception.hpp>
     34#include <boost/exception/all.hpp>
    3535
    3636#include <iostream>
  • trunk/yat/omic/BamHeader.cc

    r3417 r3423  
    3030// we need to include 'sam_header.h' when compiling against libbam
    3131#ifndef YAT_HAVE_HTSLIB
    32   #if YAT_HAVE_SAM_H
     32  #if YAT_HAVE_BAM_H
    3333  #include <sam_header.h>
    3434  #elif YAT_HAVE_BAM_BAM_H
  • trunk/yat/utility/Scheduler.cc

    r3407 r3423  
    2424#include "Scheduler.h"
    2525
    26 #include <boost/exception.hpp>
     26#include <boost/exception/all.hpp>
    2727
    2828#include <cassert>
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