Ignore:
Timestamp:
Mar 4, 2016, 3:55:42 AM (6 years ago)
Author:
Peter
Message:

use new (from samtools 1) syntax for samtools sort; the old syntax has been removed from samtools 1.3

File:
1 edited

Legend:

Unmodified
Added
Removed
  • branches/0.13-stable/test/Makefile.am

    r3413 r3470  
    322322test/data/foo.sorted.bam: test/data/foo.bam
    323323  $(AM_V_GEN)
    324   $(AM_V_at)$(SAMTOOLS) sort test/data/foo.bam test/data/foo.sorted
     324  $(AM_V_at)$(SAMTOOLS) sort -o $@ test/data/foo.bam
    325325
    326326test/data/foo.sorted.bam.bai: test/data/foo.sorted.bam
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