Changeset 3628

Timestamp:

Mar 8, 2017, 8:42:41 AM (7 years ago)

Author:

Peter

Message:

merge release 0.14.2 into trunk

Location:

trunk

Files:

• . (modified) (1 prop)
• NEWS (modified) (1 diff)
• m4/version.m4 (modified) (1 diff)
• test/dna_reverse_complement.cc (modified) (2 diffs)
• yat/omic/algorithm.h (modified) (2 diffs)

trunk/NEWS

@@ -10 +10 @@
 
 yat 0.14.x series from http://dev.thep.lu.se/yat/svn/branches/0.14-stable
+
+version 0.14.2 (released 8 March 2017)
+  - Bug fixed in omic::dna_reverse_complement_copy (see bug #886)
+
+  A complete list of closed tickets can be found here [[br]]
+  http://dev.thep.lu.se/yat/query?status=closed&milestone=yat+0.14.2
 
 version 0.14.1 (released 8 February 2017)

trunk/m4/version.m4

@@ -83 +83 @@
 # yat-0.14   11:0:0
 # yat-0.14.1 11:1:0
+# yat-0.14.2 11:2:0
 #
 # *Accidently, the libtool number was not updated for yat 0.5

trunk/test/dna_reverse_complement.cc

@@ -2 +2 @@
 
 /*
-  Copyright (C) 2016 Peter Johansson
+  Copyright (C) 2016, 2017 Peter Johansson
 
   This file is part of the yat library, http://dev.thep.lu.se/yat
@@ -35 +35 @@
   test::Suite suite(argc, argv);
 
+  std::string random("ACGTATATATAGG");
+  // test that reverse complement (in-place) and copy version yield same results
+  std::string result1(random);
+  dna_reverse_complement(result1.begin(), result1.end());
+  std::string result2;
+  dna_reverse_complement_copy(random.begin(), random.end(),
+                              std::back_inserter(result2));
+  if (result1 != result2) {
+    suite.add(false);
+    suite.err() << "input: " << random << "\n";
+    suite.err() << "dna_reverse_complement: " << result1 << "\n";
+    suite.err() << "dna_reverse_complement_copy: " << result2 << "\n";
+  }
+
   if (false) { // do not run compiler tests
     using namespace boost::iterator_archetypes;

trunk/yat/omic/algorithm.h

@@ -5 +5 @@
 
 /*
-  Copyright (C) 2012, 2013, 2014, 2016 Peter Johansson
+  Copyright (C) 2012, 2013, 2014, 2016, 2017 Peter Johansson
 
   This file is part of the yat library, http://dev.thep.lu.se/yat
@@ -190 +190 @@
     BOOST_CONCEPT_ASSERT((boost_concepts::BidirectionalTraversal<BidirectionalIterator>));
 
-    dna_complement(boost::make_reverse_iterator(begin),
-                   boost::make_reverse_iterator(end), out);
+    dna_complement(boost::make_reverse_iterator(end),
+                   boost::make_reverse_iterator(begin), out);
   }