Changeset 3834

Timestamp:

Aug 8, 2019, 3:19:22 AM (4 years ago)

Author:

Peter

Message:

test bug #928 (refs #928).

Location:

branches/0.16-stable/test

Files:

• Makefile.am (modified) (1 diff)
• data/small.gff2 (modified) (1 diff)
• gff.cc (modified) (2 diffs)

branches/0.16-stable/test/Makefile.am

@@ -123 +123 @@
 
 # tests not passing through yet
-XFAIL_TESTS =
+XFAIL_TESTS = test/gff.test
 
 DISTRIBUTED_TESTS = \

branches/0.16-stable/test/data/small.gff2

@@ -2 +2 @@
 #Chr  Source  Type  Pos_Start Pos_End Score Strand  Phase Attributes
 chr3  yat SNP 904531  904531  0.000015  . . genotype "T or C";reference "C"
-chr3  yat SNP 969190  969190  0.062500  . . genotype "T";reference "C"
+chr3  yat SNP 969190  969190  0.062500  . . genotype "T"; reference "C"

branches/0.16-stable/test/gff.cc

@@ -26 +26 @@
 #include "yat/omic/GFF2.h"
 #include "yat/omic/GFF3.h"
+
+#include "yat/utility/Exception.h"
 
 #include <cassert>
@@ -119 +121 @@
                 << "'; expected: 'T'\n";
   }
+  try {
+    if (gff.attribute("reference")!="C") {
+      suite.add(false);
+      suite.err() << "error: incorrect genotype: '" << gff.attribute("genotype")
+                  << "'; expected: 'T'\n";
+    }
+  }
+  catch (utility::runtime_error& e) {
+    suite.add(false);
+    suite.err() << "unexpected exception thrown: what: " << e.what() << "\n";
+  }
   is.close();
 }