Changeset 3983

Timestamp:

Aug 26, 2020, 4:40:05 AM (3 years ago)

Author:

Peter

Message:

remove some text not relevant anymore, when we assume c++11 and htslib

File:

• trunk/README.developer (modified) (2 diffs)

trunk/README.developer

@@ -62 +62 @@
 
 Code that depends on samtools API should be excluded from the build
-when configured --without-samtools, i.e., put files within
-`YAT_HAVE_LIBBAM` conditionals (or alternatively put code inside
-`#ifdef YAT_HAVE_SAMTOOL` preprocessor conditionals). To
-differatniuate between code that compiles against libhts and libbam,
-use `#ifdef YAT_HAVE_HTSLIB` (or `#ifndef`. In order to support
-multiple inclusion styles we do not include <bam.h> directly, but
-`#include <config_bam.h>` and `#include YAT_BAM_HEADER`. Similarly,
-for `<sam.h>` include `YAT_SAM_HEADER`. For more details on this,
-refer to `yat/omic/config_bam.h`.
+when configured --without-htslib, i.e., put files within
+`YAT_HAVE_HTSLIB` conditionals, as defined in
+'yat/utility/config_public.h'.
 
 === Doxygen ===
@@ -154 +148 @@
 http://www.gnu.org/software/libtool/manual/libtool.html#Debugging-executables
 
-
-== Avoid compiler warnings from hts.h ==
-
-When compiling with GCC in C++98 mode with -pedantic (as is
-recommended under development) the file 'htslib/hts.h' will cause
-warnings if it's not installed as system header. You can avoid this
-warning by replacing CPPFLAGS=-I/path/to/htslib with
-CPPFLAGS="-isystem /path/to/htslib".
 
 = Release Procedure =