Changeset 4057


Ignore:
Timestamp:
Mar 31, 2021, 7:46:00 AM (2 years ago)
Author:
Peter
Message:

closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.

Location:
trunk
Files:
3 added
4 edited

Legend:

Unmodified
Added
Removed

  • trunk/test/Makefile.am

    r4044 r4057  
    4242  test/bam_pair.test \
    4343  test/bam_pair_analyse.test \
     44  test/bam_pair_buffer.test \
    4445  test/bam_iterator.test \
    4546  test/bam_read_filter.test \

  • trunk/yat/omic/BamPairIterator2.h

    r4019 r4057  
    55
    66/*
    7   Copyright (C) 2020 Peter Johansson
     7  Copyright (C) 2020, 2021 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
    … …  
    6060     Note that BamPairIterator2 is a single-pass iterator, i.e., once it
    6161     is incremented the behaviour of its copies is undefined.
     62
     63     \see BamPairBuffer
    6264
    6365     \since New in yat 0.18

  • trunk/yat/omic/Makefile.am

    r3999 r4057  
    4646nobase_include_HEADERS += $(srcdir)/yat/omic/BamHeader.h
    4747nobase_include_HEADERS += $(srcdir)/yat/omic/BamPair.h
     48nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairBuffer.h
    4849nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator.h
    4950nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator2.h

  • trunk/yat/utility/Makefile.am

    r4044 r4057  
    119119  $(srcdir)/yat/utility/SmartPtr.h \
    120120  $(srcdir)/yat/utility/SmithWaterman.h \
     121  $(srcdir)/yat/utility/SortedBuffer.h \
    121122  $(srcdir)/yat/utility/sort_index.h \
    122123  $(srcdir)/yat/utility/split.h \
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