Changeset 4169


Ignore:
Timestamp:
Mar 25, 2022, 4:58:49 AM (6 months ago)
Author:
Peter
Message:

docs: don't mention libbam (since we require htslib)

Location:
trunk/yat/omic
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • trunk/yat/omic/BamHeader.h

    r3999 r4169  
    210210       \brief inverse of target_name(size_t)
    211211
    212        If compiled against libbam and \a name does not exist,
    213        behavious is undefined. If compiled against htslib, a
    214        utility::runtime_error is thrown.
     212       If \a name does not exist, a utility::runtime_error is thrown.
    215213
    216214       \since new in yat 0.11
  • trunk/yat/omic/BamRead.h

    r3999 r4169  
    409409
    410410     This is the same functionality that is provided in HTSLIB's
    411      global array \c seq_nt16_table, but this function works also when
    412      building against libbam. In libbam the array was called \c
    413      bam_nt16_table.
     411     global array \c seq_nt16_table.
    414412
    415413     This is the inverse of function nt16_str.
     
    423421
    424422     This is the same functionality that is provided in HTSLIB's
    425      global array seq_nt16_str, but this function works also when
    426      building against libbam. In libbam the array was called \c
    427      bam_nt16_rev_table.
     423     global array seq_nt16_str.
    428424
    429425     This is the inverse of function nt16_table.
  • trunk/yat/omic/config_bam.h

    r3999 r4169  
    3434#include "yat/utility/config_public.h"
    3535
    36 // These #defines are not needed anymore (since we don't suppoer
     36// These #defines are not needed anymore (since we don't support
    3737// building against libbam), but left for backward compatibility with
    3838// yat 0.17.
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