Changeset 4345


Ignore:
Timestamp:
Apr 19, 2023, 2:57:43 PM (5 months ago)
Author:
Peter
Message:

new class BamReadSequenceIterator?

Location:
trunk
Files:
3 added
3 edited

Legend:

Unmodified
Added
Removed

  • trunk/test/Makefile.am

    r4340 r4345  
    4646  test/bam_iterator.test \
    4747  test/bam_read_filter.test \
     48  test/bam_read_sequence_iterator.test \
    4849  test/bam_region_iterator.test \
    4950  test/bam_header.test \
    … …  
    231232test/bam_pair_iterator.log: test/data/foo.sorted.bam
    232233test/bam_read_filter.log: test/data/foo.sorted.bam
     234test/bam_read_sequence_iterator.log: test/data/foo.sorted.bam
    233235test/bam_region_iterator.log: test/data/foo.sorted.bam
    234236test/cmd_test.log: test/stdopt $(shell_test_deps)

  • trunk/test/Suite.h

    r4343 r4345  
    447447    {
    448448      test_lvalue_iterator(iterator);
    449       test_iterator(iterator);
     449      test_forward_traversal_iterator(iterator);
    450450    }
    451451
    … …  
    455455    {
    456456      test_lvalue_iterator(iterator);
    457       test_iterator(iterator);
     457      test_bidirectional_traversal_iterator(iterator);
    458458    }
    459459
    … …  
    463463    {
    464464      test_lvalue_iterator(iterator);
    465       test_iterator(iterator);
     465      test_random_access_traversal_iterator(iterator);
    466466    }
    467467

  • trunk/yat/omic/Makefile.am

    r4278 r4345  
    2525yat_libyat_la_SOURCES += yat/omic/BamReadFilter.cc
    2626yat_libyat_la_SOURCES += yat/omic/BamReadIterator.cc
     27yat_libyat_la_SOURCES += yat/omic/BamReadSequenceIterator.cc
    2728yat_libyat_la_SOURCES += yat/omic/BamRegion.cc
    2829yat_libyat_la_SOURCES += yat/omic/BamWriteIterator.cc
    … …  
    5455nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadFilter.h
    5556nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadIterator.h
     57nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadSequenceIterator.h
    5658nobase_include_HEADERS += $(srcdir)/yat/omic/BamRegion.h
    5759nobase_include_HEADERS += $(srcdir)/yat/omic/BamWriteIterator.h
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