Changeset 875 for trunk/test/alignment_test.cc

Timestamp:

Sep 19, 2007, 2:17:05 AM (16 years ago)

Author:

Peter

Message:

rewriting SW algo, making code clearer, and perhaps removing a few bugs...?

File:

• trunk/test/alignment_test.cc (modified) (2 diffs)

trunk/test/alignment_test.cc

@@ -114 +114 @@
     }
 
+  std::string a("AGGUUGUCCGUGGUGAGUUCGCA");
+  std::string b("GAGGUUGUCCGUGGUGAGUUCG");
+  utility::matrix m(a.size(), b.size());
+  for (size_t j=0; j<a.size(); ++j)
+    for (size_t k=0; k<b.size(); ++k)
+      m(j,k) = (a[j]==b[k] ? 1 : -1000);
+  double score=utility::SmithWaterman(m, 100, 100);
+  if (score!=21)
+    ok=false;
+
   // testing ssearch
   if (utility::ssearch("Hello", "Hll", 0.0, 1.0)!=2){
@@ -124 +134 @@
     ok=false;
 
+  if (ok)
+    *error << "Test is ok." << std::endl;
+  else
+    *error << "Test fails." << std::endl;
+    
+  if (error!=&std::cerr)
+    delete error;
+
   if (ok) {
     return 0;