|
|
@2500
|
12 years |
Peter |
document that developers should have doxygen available. refs #392
|
|
|
@2499
|
12 years |
Peter |
bump serial number
|
|
|
@2498
|
12 years |
Peter |
document r2497
|
|
|
@2497
|
12 years |
Peter |
Avoid using deprecated macros AX_{CXXCPP,CXX,LD}_CHECK_FLAG. Instead …
|
|
|
@2496
|
12 years |
Peter |
benjamini-hochberg: avoid crash when input is empty range. Speed-up …
|
|
|
@2495
|
12 years |
Peter |
correct test requirements
|
|
|
@2494
|
12 years |
Peter |
remove echos as trace is on and no reason to delete files as testdir …
|
|
|
@2493
|
12 years |
Peter |
untabify
|
|
|
@2492
|
12 years |
Peter |
check for empty htmldir (again)
|
|
|
@2491
|
12 years |
Peter |
fix distcheck. resurrect the uninstall-hook that was removed in r2487.
|
|
|
@2490
|
12 years |
Peter |
correct typos in EXTRA_DIST
|
|
|
@2489
|
12 years |
Peter |
document r2487 in NEWS
|
|
|
@2488
|
12 years |
Peter |
docs are not available in pdf so don't mention pdf in README
|
|
|
@2487
|
12 years |
Peter |
Change the semantics of htmldir and where htlm docs are
installed. …
|
|
|
@2486
|
12 years |
Peter |
remove loop over one element, and remove check if variable is empty …
|
|
|
@2485
|
12 years |
Peter |
avoid fork and long line
|
|
|
@2484
|
12 years |
Peter |
distribute test data
|
|
|
@2483
|
12 years |
Peter |
adding missing include
|
|
|
@2482
|
12 years |
Peter |
new class GFF. closes #647
|
|
|
@2481
|
12 years |
Peter |
adding missing deps to omic doxygen.mk
|
|
|
@2480
|
12 years |
Peter |
improve error message
|
|
|
@2479
|
12 years |
Peter |
refs #665. Declare PACKAGE_URL also with older autoconf. Snippet taken …
|
|
|
@2478
|
12 years |
Peter |
correct incorrect merge
|
|
|
@2477
|
12 years |
Peter |
use dir build-aux in yat-hello
|
|
|
@2476
|
12 years |
Peter |
new function benjamini_hochberg. closes #293
|
|
|
@2475
|
12 years |
Peter |
typo
|
|
|
@2474
|
12 years |
Peter |
indentation
|
|
|
@2473
|
12 years |
Peter |
improve error message when calling yat-config incorrectly. Use …
|
|
|
@2472
|
12 years |
Peter |
fixed some docs errors
|
|
|
@2471
|
12 years |
Peter |
bumping version to 0.7.3pre
|
|
|
@2470
|
12 years |
Peter |
merge patch release 0.7.2 into trunk
|
|
|
@2469
|
12 years |
Peter |
tagging version 0.7.2
|
|
|
@2468
|
12 years |
Peter |
updating copyright years
|
|
|
@2467
|
12 years |
Peter |
Preparing release v0.7.2
|
|
|
@2466
|
12 years |
Peter |
Fixed so percentiler ignores element with zero weight
|
|
|
@2465
|
12 years |
Peter |
avoid dereference end of range iterator.
|
|
|
@2464
|
12 years |
Peter |
fixes #644.
|
|
|
@2463
|
12 years |
Peter |
remove deprecated configure options: --with-gsl-prefix and …
|
|
|
@2462
|
12 years |
Peter |
docs grammar
|
|
|
@2461
|
12 years |
Peter |
fixes #663. Avoid silencing stderr.
|
|
|
@2460
|
13 years |
Peter |
doc r2459 in NEWS
|
|
|
@2459
|
13 years |
Peter |
make exception inherit from yat::utility::runtime_error rather than …
|
|
|
@2458
|
13 years |
Peter |
Always detect '--help' (fixes #637). Change CommandLine::parse so the …
|
|
|
@2457
|
13 years |
Peter |
doc typo
|
|
|
@2456
|
13 years |
Peter |
adding test for ticket refs #637.
|
|
|
@2455
|
13 years |
Peter |
closes #662
|
|
|
@2454
|
13 years |
Peter |
update comment
|
|
|
@2453
|
13 years |
Peter |
add gff test seed (to avoid make check failure)
|
|
|
@2452
|
13 years |
Peter |
remove test/data/Makefile. distribute small.gff3
|
|
|
@2451
|
13 years |
Peter |
update copyright years
|
|
|
@2450
|
13 years |
Peter |
test gff3 file. refs #647
|
|
|
@2449
|
13 years |
Peter |
fix maintainer-check
|
|
|
@2448
|
13 years |
Peter |
avoid sub-shell
|
|
|
@2447
|
13 years |
Peter |
test that configure does not abort prematurely
|
|
|
@2446
|
13 years |
Peter |
need to distribute macros explicitely as long as we don't use them.
|
|
|
@2445
|
13 years |
Peter |
adding a macro similar to AC_MSG_ERROR with the difference that it …
|
|
|
@2444
|
13 years |
Peter |
fixes #660
|
|
|
@2443
|
13 years |
Peter |
simplify code
|
|
|
@2442
|
13 years |
Peter |
distribute yat hello tarball and clarify that sources live in srcdir
|
|
|
@2441
|
13 years |
Peter |
docs typo
|
|
|
@2440
|
13 years |
Peter |
remove stray file
|
|
|
@2439
|
13 years |
Peter |
copy files with 'cp' rather than 'aclocal'
|
|
|
@2438
|
13 years |
Peter |
Move yathello test from maintainer-check to installcheck, which means …
|
|
|
@2437
|
13 years |
Peter |
advertise 'make installcheck'
|
|
|
@2436
|
13 years |
Peter |
fixed typos in comments
|
|
|
@2435
|
13 years |
Peter |
include version.h in distribution as it is no longer built (refs #2431)
|
|
|
@2434
|
13 years |
Peter |
remove svn prop 'svn:executable' from split.cc and split.h
|
|
|
@2433
|
13 years |
Peter |
remove stray lines
|
|
|
@2432
|
13 years |
Peter |
merge r2430 from 0.7-stable to trunk in order to avoid doxygen warning …
|
|
|
@2431
|
13 years |
Peter |
fixes #620. Move version defines from 'version.h' to …
|
|
|
@2430
|
13 years |
Peter |
fixes #658
|
|
|
@2429
|
13 years |
Peter |
avoid expanding $1 and $2 withing m4_syscmd
|
|
|
@2428
|
13 years |
Peter |
closes #657 and fix remove in end of maintainer-check
|
|
|
@2427
|
13 years |
Peter |
changes after feedback from Ralf Wildenhues, Automake maintainer.
|
|
|
@2426
|
13 years |
Peter |
closes #656: convert from numeric to string
|
|
|
@2425
|
13 years |
Peter |
remove YAT_SVN_RELEASE that accidentily had been included in …
|
|
|
@2424
|
13 years |
Peter |
adding some macros that generate Automake snippets. The rules include …
|
|
|
@2423
|
13 years |
Peter |
version 20 of boost macro
|
|
|
@2422
|
13 years |
Peter |
rm yat.pc before generating it, to avoid problem that 'mv' hangs with …
|
|
|
@2421
|
13 years |
Peter |
avoid installcheck failure (it tried to run yat-config.install).
|
|
|
@2420
|
13 years |
Peter |
avoid modifying yat-config during installation. Instead have a …
|
|
|
@2419
|
13 years |
Peter |
prefer 'rm -f' rather than 'rm'
|
|
|
@2418
|
13 years |
Peter |
fixes #655. add a helper script, gen-yat-pc.sh, that generates yat.pc. …
|
|
|
@2417
|
13 years |
Peter |
maintainer-clean-local assumes that nothing is built yet. Ensure that …
|
|
|
@2416
|
13 years |
Peter |
revert version to 0.8pre
|
|
|
@2415
|
13 years |
Peter |
improve Centralizer docs. fixes #652
|
|
|
@2414
|
13 years |
Peter |
correct include as mandated by our coding guideline
|
|
|
@2413
|
13 years |
Peter |
refs #651. large_file.test doesn't use libyat so no need to link …
|
|
|
@2412
|
13 years |
Peter |
bumping version to 0.7.2pre
|
|
|
@2411
|
13 years |
Peter |
merge patch release 0.7.1 into trunk
|
|
|
@2410
|
13 years |
Peter |
minor grammar
|
|
|
@2409
|
13 years |
Peter |
tagging version 0.7.1
|
|
|
@2408
|
13 years |
Peter |
Preparing release 0.7.1
|
|
|
@2407
|
13 years |
Peter |
updating copyright
|
|
|
@2406
|
13 years |
Peter |
require automake 1.10 rather than just automake (skip test with old …
|
|
|
@2405
|
13 years |
Peter |
help compiler choose correct load function. fixes #649
|
|
|
@2404
|
13 years |
Peter |
improve readability and some minor changes of the text
|
|
|
@2403
|
13 years |
Peter |
avoid compiler warnings. fixes #648
|
|
|
@2402
|
13 years |
Peter |
NEWS typo
|
|
|
@2401
|
13 years |
Peter |
bumping version to 0.7.1pre
|
|
|