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Diff Rev Age Author Log Message
(edit) @3317   8 years Peter refs #806 add test for Pileup class
(edit) @3316   8 years Peter remove trailing ws
(edit) @3315   8 years Peter added inclusion of boost iterator_facade header. refs #803.
(edit) @3314   8 years Peter new test class: weighted_iterator_archetype. refs #803
(edit) @3313   8 years Peter Correct syntax so it works in VPATH build. Correct yat-hello source so …
(edit) @3312   8 years Peter correct lazycheck deps
(edit) @3311   8 years Peter append EXTRA_DIST with some m4 files that were missing in dist (only …
(edit) @3310   8 years Peter a first version of new class Pileup. refs #806
(edit) @3309   8 years Peter fixes #811
(edit) @3308   8 years Peter fixed two more glitches in the new version of 'make …
(edit) @3307   8 years Peter bump version to 0.12.2pre
(edit) @3306   8 years Peter merge ptach release 0.12.1 into trunk
(edit) @3305   8 years Peter tagging version 0.12.1
(edit) @3304   8 years Peter Preparing release 0.12.1
(edit) @3303   8 years Peter New macro YAT_FUNC_BAM_CALEND, which checks if function bam_calend is …
(edit) @3302   8 years Peter add test for BamRead::end(). Use samtools' bam_calend if …
(edit) @3301   8 years Peter refs #810. minor corrections
(edit) @3300   8 years Peter BAM_CBACK is not #defined in older versions of bam.h. refs #810
(edit) @3299   8 years Peter fix some glitches in make release-tag-upload rule (found while …
(edit) @3298   8 years Peter Yates' correction in Fisher's exact test. fixes #807.
(edit) @3297   8 years Peter fix mess up caused in latest merge (r3295).
(edit) @3296   8 years Peter bump version to 0.12.1pre
(edit) @3295   8 years Peter merge release 0.12 into trunk
(edit) @3294   8 years Peter tagging version 0.12
(edit) @3293   8 years Peter update copyright years
(edit) @3292   8 years Peter Preparing release 0.12
(edit) @3291   8 years Jari Häkkinen Getting rid of clang warning 'unsequenced modification and access to …
(edit) @3290   8 years Peter refs #803. Correct docs and reflect that random access iterators are …
(edit) @3289   8 years Peter refs #803. use boost concepts in Spearman.
(edit) @3288   8 years Peter add doxygen since tag
(edit) @3287   8 years Peter new function sum_weight
(edit) @3286   8 years Peter fixed docs typo
(edit) @3285   8 years Peter refs #803. Use boost concepts in sort_index. Make requirements more …
(edit) @3284   8 years Peter fixes #804
(edit) @3283   8 years Peter remove trailing WS
(edit) @3282   8 years Peter avoid extra tabs
(edit) @3281   8 years Peter Using boost concepts to define requirments in Centralizer. …
(edit) @3280   8 years Peter avoid tabs on otherwise empty lines
(edit) @3279   8 years Peter use boost_concepts requirements in random namespace. refs #803
(edit) @3278   8 years Peter use boost concept requirements in random namespace. refs #803
(edit) @3277   8 years Peter add some aliases to boost iterator concepts, for convenience
(edit) @3276   8 years Peter ref #803. revert part of r3273 for the same reason as explained in r3275
(edit) @3275   8 years Peter revert r3271 and 3272; the change was dangerous since boost::facade …
(edit) @3274   8 years Peter refs #803. record r3273 in NEWS
(edit) @3273   8 years Peter refs #803. Extend iterator tests using boost concepts. For …
(edit) @3272   8 years Peter record r3271 in NEWS
(edit) @3271   8 years Peter According to boost docs [1] iterators' value type cannot be const. For …
(edit) @3270   8 years Peter When a project has a files that depends on the svn revsion such as …
(edit) @3269   8 years Peter fix some issues in YAT_SVN_RELEASE
(edit) @3268   8 years Peter fix that check-svn-diff exit 1 on success.
(edit) @3267   8 years Peter fix broken make rule 'check-svn-diff'; regressed in r3246
(edit) @3266   8 years Peter fixes #802
(edit) @3265   8 years Peter Try to get rid of clang warning: 'unsequenced modification and access …
(edit) @3264   8 years Peter avoid clang compiler warning: 'equality comparison result unused …
(edit) @3263   8 years Peter typo in PP guard (caught by clang)
(edit) @3262   8 years Peter boost::Convertible<X, Y> with X being a reference causes compiler …
(edit) @3261   8 years Peter newer versions of doxygen (1.8.7) complain when using same label in …
(edit) @3260   8 years Jari Häkkinen Adding #includes needed on Mac OSX 10.9 Mavericks
(edit) @3259   8 years Peter deprecated class Range. closes #786
(edit) @3258   8 years Peter correct docs of YAT_DEV_BUILD
(edit) @3257   8 years Peter added missing deprecated attribute
(edit) @3256   8 years Peter prefix DEV_BUILD with YAT_ (or uppercase(PACKAGE_) in general case, so …
(edit) @3255   8 years Peter removed repeat typedef
(edit) @3254   8 years Peter fixes #799
(edit) @3253   8 years Peter refs #799. get_error: don't use operator<< on Key just to create an …
(edit) @3252   8 years Peter avoid split in Codon
(edit) @3251   8 years Peter remove WS
(edit) @3250   8 years Peter remove gen_announce.sh.in since creation of announcement is now coded …
(edit) @3249   8 years Peter mention Deleter in SmartPtr? doc
(edit) @3248   8 years Peter update RP instructions to reflect that sf_user is no longer hard-coded
(edit) @3247   8 years Peter docs: fixed typo in example code
(edit) @3246   8 years Peter move some more targets from Makefile.am to macro YAT_SVN_RELEASE. Make …
(edit) @3245   8 years Peter avoid sorting entire range; instead let Percentiler be clever
(edit) @3244   8 years Peter prefer range constructor
(edit) @3243   8 years Peter speed up Percentiler when input range is unweighted and unsorted. Do …
(edit) @3242   8 years Peter docs typo (and English)
(edit) @3241   8 years Peter prefer range constructor over assigning with std::copy. remove dead code
(edit) @3240   8 years Peter remove WS
(edit) @3239   8 years Peter prefer range constructor over copy range with std::copy
(edit) @3238   8 years Peter sort_index: add some compile tests, CONCEPT_ASSERTs, and add docs on …
(edit) @3237   8 years Peter re-write sort_index so it's not limited to ranges of double but work …
(edit) @3236   8 years Peter BH correction on unsorted range. closes #796
(edit) @3235   8 years Peter fix some copy n paste in previous revision, and removed some includes …
(edit) @3234   8 years Peter fixes #797
(edit) @3233   8 years Peter refs #797. Fix the bug in 0.11.x
(edit) @3232   8 years Peter tidy up indentation, and minor code change
(edit) @3231   8 years Peter tweak for clarity
(edit) @3230   8 years Peter typo
(edit) @3229   8 years Peter translate variables when PACKAGE is not suitable as shell variable or …
(edit) @3228   8 years Peter test for YAT_HEADER_ASSERT
(edit) @3227   8 years Peter improve 'required' field. The tests use aclocal via the bootstrap …
(edit) @3226   8 years Peter New macro YAT_HEADER_ASSERT
(edit) @3225   8 years Peter make code more readable
(edit) @3224   8 years Peter improve documentation; remove trailing WS
(edit) @3223   8 years Peter add pointer to boost::lockfree
(edit) @3222   8 years Peter prefer tp declare functions alphabetically. Implement …
(edit) @3221   8 years Peter deprecate BamRead::cigar(vector<uint32_t>) and provide a new function …
(edit) @3220   8 years Peter bump version to 0.13pre
(edit) @3219   8 years Peter fix typo
(edit) @3218   8 years Peter New stable branch 0.12
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