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Diff Rev Age Author Log Message
(edit) @4030   3 years Peter preparing release 0.18.1
(edit) @4029   3 years Peter extend the tests show what the comparison functors take as argument; …
(edit) @4028   3 years Peter fixes #970
(edit) @4027   3 years Peter refs #968; fix implementation of SegmentSet::insert_merge and add some …
(edit) @4026   3 years Peter add rvalue insert to SegmentSet?; closes #968.
(edit) @4025   3 years Peter add move constructor for BamPair?
(edit) @4024   3 years Peter refs #968; SegmentTree::insert taking rvalue
(edit) @4023   3 years Peter refs #968; Segment constrctor taking rvalues
(edit) @4022   3 years Peter prefer std::shared_ptr over boost
(edit) @4021   3 years Peter closes #961. Improve message in thrown exceptions.
(edit) @4020   3 years Peter bump version to 0.18.1pre
(edit) @4019   3 years Peter merge 0.18 into trunk
(edit) @4018   3 years Peter tagging version 0.18
(edit) @4017   3 years Peter correct date format
(edit) @4016   3 years Peter updating copyright years
(edit) @4015   3 years Peter Preparing release 0.18
(edit) @4014   3 years Peter prefer std::shared_ptr over boost
(edit) @4013   3 years Peter fix test failure when srcdir was absolute path
(edit) @4012   3 years Peter ../$(scrdir) does not work when srcdir is an absolute path
(edit) @4011   3 years Peter Use std smart pointers instead of boost. Prefer initialisation of …
(edit) @4010   3 years Peter Implement move constructo and move-assignment operator for …
(edit) @4009   3 years Peter closes #965; Default constructor for DiscreteGeneral?
(edit) @4008   3 years Peter Remove Distribution class and its daughter classes. It used …
(edit) @4007   3 years Peter There was a typo that yat_result was first set to "non required" and …
(edit) @4006   3 years Peter fix bug that doxygen.config was not updated when set of input files …
(edit) @4005   3 years Peter int8_t needs <cstdint> when sam.h isn't included
(edit) @4004   3 years Peter add \since tag for new exception class invalid_argument
(edit) @4003   3 years Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
(edit) @4002   3 years Peter Creating a private branch for refactoring of KendallScore? (refs #710)
(edit) @4001   3 years Peter Bumping version to 0.19pre
(edit) @4000   3 years Peter New stable branch 0.18
(edit) @3999   3 years Peter update copyright years
(edit) @3998   3 years Peter Prepare 0.18-stable branch
(edit) @3997   3 years Peter merge 0.17-stable branch into trunk
(edit) @3996   3 years Peter prefer std smart pointers
(edit) @3995   3 years Peter avoid using macros marked obsolete and instead use versions in LT_ …
(edit) @3994   3 years Peter simplify code
(edit) @3993   3 years Peter simplify code
(edit) @3992   3 years Peter recommend std rather than boost
(edit) @3991   3 years Peter new constructor in GenomicPosition?
(edit) @3990   3 years Peter prefer name with 'htslib' (instead of 'samtools')
(edit) @3989   3 years Peter there is no default sf_user; make the text reflect that.
(edit) @3988   3 years Peter bumping version to 0.17.3pre
(edit) @3987   3 years Peter merge release 0.17.2 into trunk
(edit) @3986   3 years Peter tagging version 0.17.2
(edit) @3985   3 years Peter update copyright years
(edit) @3984   3 years Peter Preparing release 0.17.2
(edit) @3983   3 years Peter remove some text not relevant anymore, when we assume c++11 and htslib
(edit) @3982   3 years Peter improve docs
(edit) @3981   3 years Peter cater for c++98
(edit) @3980   3 years Peter fixes #957. NegativeBinomial? now inherits from Multivariate
(edit) @3979   3 years Peter fix distcheck (refs #954)
(edit) @3978   3 years Peter leftover (refs #954)
(edit) @3977   3 years Peter avoid accessing passed matrix (Ain) after it has been moved.
(edit) @3976   3 years Peter mention #955 in NEWS
(edit) @3975   3 years Peter fixes #955. The correction term involving count_triple() was not …
(edit) @3974   3 years Peter remove a dead declaration in test::SUite class and improve docs of …
(edit) @3973   3 years Peter add dependency for lazycheck (refs #955)
(edit) @3972   3 years Peter add test data for statistics::Kendall (refs #955)
(edit) @3971   3 years Peter fixes #956. Vector::resize(0) did not work when the vector was …
(edit) @3970   3 years Peter explain what position is when inside an insertion
(edit) @3969   3 years Peter docs typo
(edit) @3968   3 years Peter merge r3967 into trunk
(edit) @3967   3 years Peter fix leftover issues for r3965 (refs #954) caught by distcheck: …
(edit) @3966   3 years Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
(edit) @3965   3 years Peter fixes #954. Avoid reading config file from stdin with doxygen.
(edit) @3964   3 years Peter avoid warning with doxygen 1.8.19
(edit) @3963   3 years Peter new function supposed to be used by GSL error handler, resulting in a …
(edit) @3962   3 years Peter a4wide used to be the default value for PAPER_TYPE. but with modern …
(edit) @3961   3 years Peter fixes #845. Replace default GSL error handler in tests with one that …
(edit) @3960   3 years Peter closes #953. Since we are no longer using libboost_thread (or …
(edit) @3959   3 years Peter use std::mutex and friends instead of boost variants. refs #953
(edit) @3958   3 years Peter change to using std distributions instead of boost. Some distributions …
(edit) @3957   3 years Peter closes #890. Implement normalizer::UnityScaler?.
(edit) @3956   3 years Peter simplify code
(edit) @3955   3 years Peter use std::move and friend rather than internal macro (since we can …
(edit) @3954   3 years Peter bind2nd is deprecated in C++11 (and removed in c++17). Replace with …
(edit) @3953   3 years Peter refs #890. Implement RangeNormalizer?, a generalization of Centralizer …
(edit) @3952   3 years Peter required version is sufficient
(edit) @3951   3 years Peter update copyright years
(edit) @3950   3 years Peter Double-quote 2nd argument in YAT_SET_CONTAINS to allow expansion of …
(edit) @3949   3 years Peter use std::thread rather than boost::thread in test, refs #953
(edit) @3948   3 years Peter replace boost::thread with std::thread in Scheduler. refs #953
(edit) @3947   3 years Peter fix includes
(edit) @3946   3 years Peter use mutex and locks from std:: rather than boost::. refs #953
(edit) @3945   3 years Peter avoid hard-coding autotools in tests and instead set shell variables …
(edit) @3944   3 years Peter Since we require C++11 compiler (refs #949), no need to check if …
(edit) @3943   3 years Peter merge r3941 into trunk
(edit) @3942   3 years Peter Same change as r3932 in trunk. Config variable PERL_PATH is obsolete …
(edit) @3941   3 years Peter Change doxygen test. Rather than SKIP when doxygen 1.8.[15-17] is …
(edit) @3940   3 years Peter update copyright years
(edit) @3939   3 years Peter update README to reflect that C++11 is not optional. closes #949
(edit) @3938   3 years Peter let configure fail if compiler is not a C++11 compiler. …
(edit) @3937   3 years Peter refs #949. New macro YAT_CXX11 that tests if compiler is CXX compliant …
(edit) @3936   3 years Peter merge changeset r3935 into trunk
(edit) @3935   3 years Peter avoid compiler warning about catching polymorphic type by value
(edit) @3934   3 years Peter using default rules in GNU make, libraries such as -lfoo should be …
(edit) @3933   3 years Peter package is called zlib
(edit) @3932   3 years Peter Config variable PERL_PATH is obsolete and causing a warning with …
(edit) @3931   3 years Peter bump version to 0.17.2pre
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