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Diff Rev Age Author Log Message
(edit) @4057   2 years Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
(edit) @4056   2 years Peter docs: fix typo and add clarification
(edit) @4055   2 years Peter remove unneeded includes
(edit) @4054   2 years Peter mention modified interface in previous commit
(edit) @4053   2 years Peter add some test for correlation(Matrix); speed up, particuarly when …
(edit) @4052   2 years Peter add description on what is optimised during the training.
(edit) @4051   2 years Peter make Target::classifier() const; closes #972
(edit) @4050   2 years Peter remove white-space
(edit) @4049   2 years Peter do not allow implicit conversion
(edit) @4048   2 years Peter add parameter allowing scaling to other than unity variance.
(edit) @4047   2 years Peter corrected includes
(edit) @4046   2 years Peter docs typo
(edit) @4045   2 years Peter add missing file
(edit) @4044   2 years Peter new function multiprocess; closes #958
(edit) @4043   2 years Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
(edit) @4042   2 years Peter upgrade to autoconf-archive-2021.02.19
(edit) @4041   2 years Peter avoid constructing temporary substring just for comparison
(edit) @4040   2 years Peter speed-up; prefer move instead of copy
(edit) @4039   2 years Peter Using me::value_type propagated to compilation errors and created …
(edit) @4038   2 years Peter merge trunk into branch
(edit) @4037   2 years Peter skeleton for new Ranking container. refs #710.
(edit) @4036   2 years Peter closes #963. New class PercentileConfidenceInterval?
(edit) @4035   2 years Peter skeleton for PercentileConfidenceInterval?; refs #963
(edit) @4034   2 years Peter Decouple variables for extra programs and test programs, to allow …
(edit) @4033   2 years Peter bumping version to 0.18.2pre
(edit) @4032   2 years Peter merge release 0.18.1 into trunk
(edit) @4031   2 years Peter tagging version 0.18.1
(edit) @4030   2 years Peter preparing release 0.18.1
(edit) @4029   2 years Peter extend the tests show what the comparison functors take as argument; …
(edit) @4028   2 years Peter fixes #970
(edit) @4027   2 years Peter refs #968; fix implementation of SegmentSet::insert_merge and add some …
(edit) @4026   2 years Peter add rvalue insert to SegmentSet?; closes #968.
(edit) @4025   2 years Peter add move constructor for BamPair?
(edit) @4024   2 years Peter refs #968; SegmentTree::insert taking rvalue
(edit) @4023   2 years Peter refs #968; Segment constrctor taking rvalues
(edit) @4022   2 years Peter prefer std::shared_ptr over boost
(edit) @4021   2 years Peter closes #961. Improve message in thrown exceptions.
(edit) @4020   2 years Peter bump version to 0.18.1pre
(edit) @4019   2 years Peter merge 0.18 into trunk
(edit) @4018   2 years Peter tagging version 0.18
(edit) @4017   2 years Peter correct date format
(edit) @4016   2 years Peter updating copyright years
(edit) @4015   2 years Peter Preparing release 0.18
(edit) @4014   2 years Peter prefer std::shared_ptr over boost
(edit) @4013   2 years Peter fix test failure when srcdir was absolute path
(edit) @4012   2 years Peter ../$(scrdir) does not work when srcdir is an absolute path
(edit) @4011   2 years Peter Use std smart pointers instead of boost. Prefer initialisation of …
(edit) @4010   2 years Peter Implement move constructo and move-assignment operator for …
(edit) @4009   2 years Peter closes #965; Default constructor for DiscreteGeneral?
(edit) @4008   2 years Peter Remove Distribution class and its daughter classes. It used …
(edit) @4007   2 years Peter There was a typo that yat_result was first set to "non required" and …
(edit) @4006   2 years Peter fix bug that doxygen.config was not updated when set of input files …
(edit) @4005   2 years Peter int8_t needs <cstdint> when sam.h isn't included
(edit) @4004   2 years Peter add \since tag for new exception class invalid_argument
(edit) @4003   2 years Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
(edit) @4002   2 years Peter Creating a private branch for refactoring of KendallScore? (refs #710)
(edit) @4001   2 years Peter Bumping version to 0.19pre
(edit) @4000   2 years Peter New stable branch 0.18
(edit) @3999   2 years Peter update copyright years
(edit) @3998   2 years Peter Prepare 0.18-stable branch
(edit) @3997   2 years Peter merge 0.17-stable branch into trunk
(edit) @3996   2 years Peter prefer std smart pointers
(edit) @3995   3 years Peter avoid using macros marked obsolete and instead use versions in LT_ …
(edit) @3994   3 years Peter simplify code
(edit) @3993   3 years Peter simplify code
(edit) @3992   3 years Peter recommend std rather than boost
(edit) @3991   3 years Peter new constructor in GenomicPosition?
(edit) @3990   3 years Peter prefer name with 'htslib' (instead of 'samtools')
(edit) @3989   3 years Peter there is no default sf_user; make the text reflect that.
(edit) @3988   3 years Peter bumping version to 0.17.3pre
(edit) @3987   3 years Peter merge release 0.17.2 into trunk
(edit) @3986   3 years Peter tagging version 0.17.2
(edit) @3985   3 years Peter update copyright years
(edit) @3984   3 years Peter Preparing release 0.17.2
(edit) @3983   3 years Peter remove some text not relevant anymore, when we assume c++11 and htslib
(edit) @3982   3 years Peter improve docs
(edit) @3981   3 years Peter cater for c++98
(edit) @3980   3 years Peter fixes #957. NegativeBinomial? now inherits from Multivariate
(edit) @3979   3 years Peter fix distcheck (refs #954)
(edit) @3978   3 years Peter leftover (refs #954)
(edit) @3977   3 years Peter avoid accessing passed matrix (Ain) after it has been moved.
(edit) @3976   3 years Peter mention #955 in NEWS
(edit) @3975   3 years Peter fixes #955. The correction term involving count_triple() was not …
(edit) @3974   3 years Peter remove a dead declaration in test::SUite class and improve docs of …
(edit) @3973   3 years Peter add dependency for lazycheck (refs #955)
(edit) @3972   3 years Peter add test data for statistics::Kendall (refs #955)
(edit) @3971   3 years Peter fixes #956. Vector::resize(0) did not work when the vector was …
(edit) @3970   3 years Peter explain what position is when inside an insertion
(edit) @3969   3 years Peter docs typo
(edit) @3968   3 years Peter merge r3967 into trunk
(edit) @3967   3 years Peter fix leftover issues for r3965 (refs #954) caught by distcheck: …
(edit) @3966   3 years Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
(edit) @3965   3 years Peter fixes #954. Avoid reading config file from stdin with doxygen.
(edit) @3964   3 years Peter avoid warning with doxygen 1.8.19
(edit) @3963   3 years Peter new function supposed to be used by GSL error handler, resulting in a …
(edit) @3962   3 years Peter a4wide used to be the default value for PAPER_TYPE. but with modern …
(edit) @3961   3 years Peter fixes #845. Replace default GSL error handler in tests with one that …
(edit) @3960   3 years Peter closes #953. Since we are no longer using libboost_thread (or …
(edit) @3959   3 years Peter use std::mutex and friends instead of boost variants. refs #953
(edit) @3958   3 years Peter change to using std distributions instead of boost. Some distributions …
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