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Diff Rev Age Author Log Message
(edit) @4059   6 months Peter new function: round, which is rounding elements in a range with the …
(edit) @4058   6 months Peter a not-so-random number generator that can be used to fill containers …
(edit) @4057   7 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
(edit) @4056   7 months Peter docs: fix typo and add clarification
(edit) @4055   7 months Peter remove unneeded includes
(edit) @4054   7 months Peter mention modified interface in previous commit
(edit) @4053   7 months Peter add some test for correlation(Matrix); speed up, particuarly when …
(edit) @4052   7 months Peter add description on what is optimised during the training.
(edit) @4051   8 months Peter make Target::classifier() const; closes #972
(edit) @4050   8 months Peter remove white-space
(edit) @4049   8 months Peter do not allow implicit conversion
(edit) @4048   8 months Peter add parameter allowing scaling to other than unity variance.
(edit) @4047   8 months Peter corrected includes
(edit) @4046   8 months Peter docs typo
(edit) @4045   8 months Peter add missing file
(edit) @4044   8 months Peter new function multiprocess; closes #958
(edit) @4043   8 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
(edit) @4042   8 months Peter upgrade to autoconf-archive-2021.02.19
(edit) @4041   8 months Peter avoid constructing temporary substring just for comparison
(edit) @4040   8 months Peter speed-up; prefer move instead of copy
(edit) @4039   8 months Peter Using me::value_type propagated to compilation errors and created …
(edit) @4038   9 months Peter merge trunk into branch
(edit) @4037   9 months Peter skeleton for new Ranking container. refs #710.
(edit) @4036   9 months Peter closes #963. New class PercentileConfidenceInterval?
(edit) @4035   9 months Peter skeleton for PercentileConfidenceInterval?; refs #963
(edit) @4034   9 months Peter Decouple variables for extra programs and test programs, to allow …
(edit) @4033   9 months Peter bumping version to 0.18.2pre
(edit) @4032   9 months Peter merge release 0.18.1 into trunk
(edit) @4031   9 months Peter tagging version 0.18.1
(edit) @4030   9 months Peter preparing release 0.18.1
(edit) @4029   9 months Peter extend the tests show what the comparison functors take as argument; …
(edit) @4028   9 months Peter fixes #970
(edit) @4027   9 months Peter refs #968; fix implementation of SegmentSet::insert_merge and add some …
(edit) @4026   9 months Peter add rvalue insert to SegmentSet?; closes #968.
(edit) @4025   9 months Peter add move constructor for BamPair?
(edit) @4024   10 months Peter refs #968; SegmentTree::insert taking rvalue
(edit) @4023   10 months Peter refs #968; Segment constrctor taking rvalues
(edit) @4022   10 months Peter prefer std::shared_ptr over boost
(edit) @4021   11 months Peter closes #961. Improve message in thrown exceptions.
(edit) @4020   12 months Peter bump version to 0.18.1pre
(edit) @4019   12 months Peter merge 0.18 into trunk
(edit) @4018   12 months Peter tagging version 0.18
(edit) @4017   12 months Peter correct date format
(edit) @4016   12 months Peter updating copyright years
(edit) @4015   12 months Peter Preparing release 0.18
(edit) @4014   12 months Peter prefer std::shared_ptr over boost
(edit) @4013   12 months Peter fix test failure when srcdir was absolute path
(edit) @4012   12 months Peter ../$(scrdir) does not work when srcdir is an absolute path
(edit) @4011   12 months Peter Use std smart pointers instead of boost. Prefer initialisation of …
(edit) @4010   12 months Peter Implement move constructo and move-assignment operator for …
(edit) @4009   12 months Peter closes #965; Default constructor for DiscreteGeneral?
(edit) @4008   12 months Peter Remove Distribution class and its daughter classes. It used …
(edit) @4007   12 months Peter There was a typo that yat_result was first set to "non required" and …
(edit) @4006   12 months Peter fix bug that doxygen.config was not updated when set of input files …
(edit) @4005   12 months Peter int8_t needs <cstdint> when sam.h isn't included
(edit) @4004   12 months Peter add \since tag for new exception class invalid_argument
(edit) @4003   12 months Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
(edit) @4002   12 months Peter Creating a private branch for refactoring of KendallScore? (refs #710)
(edit) @4001   13 months Peter Bumping version to 0.19pre
(edit) @4000   13 months Peter New stable branch 0.18
(edit) @3999   13 months Peter update copyright years
(edit) @3998   13 months Peter Prepare 0.18-stable branch
(edit) @3997   13 months Peter merge 0.17-stable branch into trunk
(edit) @3996   13 months Peter prefer std smart pointers
(edit) @3995   13 months Peter avoid using macros marked obsolete and instead use versions in LT_ …
(edit) @3994   13 months Peter simplify code
(edit) @3993   13 months Peter simplify code
(edit) @3992   13 months Peter recommend std rather than boost
(edit) @3991   14 months Peter new constructor in GenomicPosition?
(edit) @3990   14 months Peter prefer name with 'htslib' (instead of 'samtools')
(edit) @3989   14 months Peter there is no default sf_user; make the text reflect that.
(edit) @3988   14 months Peter bumping version to 0.17.3pre
(edit) @3987   14 months Peter merge release 0.17.2 into trunk
(edit) @3986   14 months Peter tagging version 0.17.2
(edit) @3985   14 months Peter update copyright years
(edit) @3984   14 months Peter Preparing release 0.17.2
(edit) @3983   14 months Peter remove some text not relevant anymore, when we assume c++11 and htslib
(edit) @3982   14 months Peter improve docs
(edit) @3981   14 months Peter cater for c++98
(edit) @3980   14 months Peter fixes #957. NegativeBinomial? now inherits from Multivariate
(edit) @3979   14 months Peter fix distcheck (refs #954)
(edit) @3978   14 months Peter leftover (refs #954)
(edit) @3977   14 months Peter avoid accessing passed matrix (Ain) after it has been moved.
(edit) @3976   14 months Peter mention #955 in NEWS
(edit) @3975   14 months Peter fixes #955. The correction term involving count_triple() was not …
(edit) @3974   14 months Peter remove a dead declaration in test::SUite class and improve docs of …
(edit) @3973   14 months Peter add dependency for lazycheck (refs #955)
(edit) @3972   14 months Peter add test data for statistics::Kendall (refs #955)
(edit) @3971   14 months Peter fixes #956. Vector::resize(0) did not work when the vector was …
(edit) @3970   15 months Peter explain what position is when inside an insertion
(edit) @3969   15 months Peter docs typo
(edit) @3968   15 months Peter merge r3967 into trunk
(edit) @3967   15 months Peter fix leftover issues for r3965 (refs #954) caught by distcheck: …
(edit) @3966   15 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
(edit) @3965   15 months Peter fixes #954. Avoid reading config file from stdin with doxygen.
(edit) @3964   15 months Peter avoid warning with doxygen 1.8.19
(edit) @3963   15 months Peter new function supposed to be used by GSL error handler, resulting in a …
(edit) @3962   15 months Peter a4wide used to be the default value for PAPER_TYPE. but with modern …
(edit) @3961   15 months Peter fixes #845. Replace default GSL error handler in tests with one that …
(edit) @3960   15 months Peter closes #953. Since we are no longer using libboost_thread (or …
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