

@714

16 years 
Jari Häkkinen 
Addresses #170..



@713

16 years 
Peter 
Fixes #77, #78, #158, and #163, and refs #81



@712

16 years 
Jari Häkkinen 
Forgot to check in FileUtil? test program.



@711

16 years 
Jari Häkkinen 
Fixes #1 and #80. Interface changed.



@710

16 years 
Jari Häkkinen 
Addresses #1 and #80. Changed FileIO to FileUtil? and added tests on …



@709

16 years 
Jari Häkkinen 
Addresses #1 and #80. Issues fixed, but bogus params to functions …



@708

16 years 
Peter 
added info on enabledebug flag in README file.



@707

16 years 
Peter 
grammar



@706

16 years 
Jari Häkkinen 
Addresses #65 and #170.



@705

16 years 
Jari Häkkinen 
Improved code readability.



@704

16 years 
Markus Ringnér 
Fixes #104. Also fixed inline bug in Averager.h



@703

16 years 
Jari Häkkinen 
Addresses #65 and #170.



@702

16 years 
Peter 
Refs #81 moved mse_ to inherited classes and made mse() pure virtual …



@701

16 years 
Peter 
updated includes



@700

16 years 
Peter 
fixed bug



@699

16 years 
Peter 
fixed docs



@698

16 years 
Peter 
changed variable msd to mse. refs #81



@697

16 years 
Peter 
added features to Regression::OneDimensional? and moved thing not being …



@696

16 years 
Peter 
added msd function in regression



@695

16 years 
Peter 
References #81 improved documentation



@694

16 years 
Peter 
refs #118 Added flag to configure 'enabledebug'. If this flag is …



@693

16 years 
Jari Häkkinen 
Clarified doc and comments.



@692

16 years 
Peter 
Fixes #56 and some doxygen issues for SVM



@691

16 years 
Peter 
added description on microarray namespace



@690

16 years 
Peter 
fixed automake issue



@689

16 years 
Peter 
Fixed some Makefile issues in microarray



@688

16 years 
Peter 
Refs #150 Initial checkin of microarray::DataSet? class. This …



@687

16 years 
Jari Häkkinen 
Clean up of namespace comments.



@686

16 years 
Jari Häkkinen 
Fixes #17. Constness of vectors and views are stricltly
maintained. …



@685

16 years 
Jari Häkkinen 
Changing a vector view to be a const view as it should be.



@684

16 years 
Jari Häkkinen 
Cleaning.



@683

16 years 
Jari Häkkinen 
Addresses #153. Clean up of code.



@682

16 years 
Jari Häkkinen 
Addresses #153. Moved regression files to .../yat/regression.



@681

16 years 
Jari Häkkinen 
Moved namespace regression up one level (leaving namespace statistics).



@680

16 years 
Jari Häkkinen 
Addresses #153. Introduced yat namespace. Removed alignment namespace. …



@679

16 years 
Markus Ringnér 
Fixed some minor stuff so it compiles on eddie.thep.lu.se running g++3.2



@678

16 years 
Jari Häkkinen 
Added yat logo.



@677

16 years 
Jari Häkkinen 
Removed stray ! characters.



@676

16 years 
Jari Häkkinen 
Fixed #83. This message applies to this revision and
revision:675. …



@675

16 years 
Jari Häkkinen 
References #83. Changing project name to yat. Compilation will fail in …



@674

16 years 
Peter 
fixes #152



@673

16 years 
Peter 
fixed dox in SNR



@672

16 years 
Peter 
added MAD function in statistics



@671

16 years 
Peter 
fixed some percentile dox refs #69



@670

16 years 
Peter 
added cv function in Averager



@669

16 years 
Peter 
#closes #88. SAM score class added



@668

16 years 
Peter 
removing debug code



@667

16 years 
Peter 
refs #151 using Functor now in consensusinputranker to retrieve …



@666

16 years 
Peter 
refs #151, added IRRetreive functors and prepared ConsensusInputRanker? …



@665

16 years 
Peter 
Fixes #142. Added access to score the InputRanking? is based upon. …



@664

16 years 
Peter 
modified TODO to be in line with the Trac pages



@663

16 years 
Peter 
added assignment operator in Target



@662

16 years 
Peter 
refs #57 added class for Naive Baysian Classification. Predict …



@661

16 years 
Peter 
refs #68 added link to Weighted statistics document and svndigest …



@660

16 years 
Peter 
closes #140 moved Index class to its own file and changed name to SVindex



@659

16 years 
Peter 
fixes #147 and #136



@658

16 years 
Peter 
added function in KernelLookup? to create a KernelLookup? from inner …



@657

16 years 
Peter 
finishing cleaning



@656

16 years 
Peter 
fixes #145 cleaning up interface of DataLook2D. Those function were …



@655

16 years 
Peter 
improved documentation on EnsembleBulder::predict



@654

16 years 
Peter 
replaced some doublespaces with tabs making Doxygen parsing the …



@653

16 years 
Peter 
updated copyright statement



@652

16 years 
Peter 
added tag in config file so namespaces are included in sorting class …



@651

16 years 
Peter 
corrected dox in Kernel classes



@650

16 years 
Peter 
corrected documentation to be in line with guidinglines



@649

16 years 
Jari Häkkinen 
Fixed typo in doxygen comment.



@648

16 years 
Peter 
fixes #133 removed all errors reported from Doxygen. Only one error …



@647

16 years 
Peter 
fixes #137 added flag for doxygen to write includes in preferable way.



@646

16 years 
Peter 
removing pointer_comare because it is not a pointer_compare but rather …



@645

16 years 
Markus Ringnér 
Minor things



@644

16 years 
Jari Häkkinen 
Set svndigest:ignore property on test data.



@643

16 years 
Jari Häkkinen 
These are now superseeded by svndigest project, …



@642

16 years 
Peter 
adding class for selecting features by random



@641

16 years 
Peter 
added tag for Doxygen preprocessor to exclude internal Index class in SVM



@640

16 years 
Peter 
fixes #132 and #95, and refs #135 replaced bool owner in DataLookup2D …



@639

16 years 
Markus Ringnér 
Fixed documentation bugs



@638

16 years 
Markus Ringnér 
Fixes #131



@637

16 years 
Peter 
fixes #122



@636

16 years 
Peter 
closes #120 removed weights from SubsetGenerator?



@635

16 years 
Peter 
closes #106 make_classifier is again taking DataLookup2D and Target …



@634

16 years 
Markus Ringnér 
Fixed NCC predict to work with MatrixLookupWeighted?



@633

16 years 
Markus Ringnér 
Minor fix



@632

16 years 
Markus Ringnér 
Changes in NCC to support weight using MatrixLookupWeighted?. Still …



@631

16 years 
Peter 
fixes #102 added weighted() to DataLookup2D.



@630

16 years 
Peter 
fixes #117



@629

16 years 
Peter 
fixes #125 removing obsolete function and cleaning in Kernel classes.



@628

16 years 
Peter 
fixes #116 and #90 removed classes KernelWeighted_SEV and …



@627

16 years 
Peter 
fixes #124 also extended interface of AveragerPairWeighted? supporting …



@626

16 years 
Peter 
fixes #113 and #114 removed Featureselection from NCC and …



@625

16 years 
Peter 
fixes #115 and ref #113 removed feature selection from SVM



@624

16 years 
Peter 
fixes #109 and #110



@623

16 years 
Peter 
fixes #112 and refs #123 added overloaded function score taking Target …



@622

16 years 
Peter 
fixes #111



@621

16 years 
Peter 
fixes #108 SubsetGenerator? with featureselection is now supported for …



@620

16 years 
Markus Ringnér 
Fixed problems with Averager that sometimes appeared as failures in …



@619

16 years 
Peter 
fixes #107 and refs #105 fixed bug in EnsembleBuilder? and removed some …



@618

16 years 
Peter 
removing branch



@617

16 years 
Jari Häkkinen 
Cleaned up stray gslapi stuff.



@616

16 years 
Jari Häkkinen 
Removed gslapi namespace and put the code into utility namespace.
Move …



@615

16 years 
Peter 
ref #60 NOTE: there is most likely a bug around. I have removed the …


