source: branches/0.10-stable

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Diff Rev Age Author Log Message
(edit) @3019   8 years Peter bumping version to 0.10.3pre
(edit) @3016   8 years Peter avoid make warnings in parallel build
(edit) @3015   8 years Peter prefer April not Apr in NEWS
(edit) @3014   8 years Peter update copyright years
(edit) @3013   8 years Peter preparing 0.10.2 release
(edit) @3012   8 years Peter typo
(edit) @3011   8 years Peter leftover from prev commit
(edit) @3010   8 years Peter move components in tag_and_release to make target so Make variables …
(edit) @3009   8 years Peter soften installcheck on html docs
(edit) @3008   8 years Peter avoid spurious test error: use yat-config --ldflags when linking. refs #745
(edit) @3003   8 years Peter prefer flat_namespace on darwin (OSX). refs #745
(edit) @3000   8 years Peter fixes bug in KolmogorovSmirnov::remove. closes #753.
(edit) @2997   8 years Peter improve error message
(edit) @2996   8 years Peter docs typo
(edit) @2991   8 years Peter avoid path problem when MKDIR_P is defined as install-sh
(edit) @2979   8 years Peter extending test for BamRead::cigar
(edit) @2977   9 years Peter fixes #749. turn off assertions (default).
(edit) @2974   9 years Jari Häkkinen Addresses #747
(edit) @2972   9 years Peter refs #745. Implement a workaround when bam_nt16_rev_table is not …
(edit) @2971   9 years Peter make docs more vaguer on behaviour of bam iterators working on same …
(edit) @2970   9 years Peter surround test1 call with #ifdef HAVE_LIBBAM since test1 is not …
(edit) @2969   9 years Peter update copyright years
(edit) @2968   9 years Peter add doxygen relates tag
(edit) @2967   9 years Jari Häkkinen Includes needed in openSUSE 12.2
(edit) @2965   9 years Peter add doxygen tag relates for BamRead?
(edit) @2962   9 years Peter fixes #743
(edit) @2961   9 years Peter post release admin
(edit) @2958   9 years Peter prepare release 0.10.1
(edit) @2957   9 years Peter update copyright years
(edit) @2956   9 years Peter update NEWS
(edit) @2955   9 years Peter refs #736. Fix creation of yat.pc
(edit) @2954   9 years Peter fixes #733 and #736. Do not link -lbam into libyat.la, but do mention …
(edit) @2953   9 years Peter implement BamHeader::target_length(). fixes #740
(edit) @2947   9 years Peter #define/#undef HAVE_SAMTOOL_BAM_H in config_public.h.in and remove …
(edit) @2944   9 years Peter bumping version to 0.10.1pre
(edit) @2941   9 years Peter correct typo
(edit) @2940   9 years Peter update copyright years
(edit) @2939   9 years Peter Prepare 0.10 release
(edit) @2938   9 years Peter unset some make variables in tests. fixes #731
(edit) @2937   9 years Peter improve doc
(edit) @2936   9 years Peter avoid repeating code
(edit) @2935   9 years Peter avoid multiple calls to join_all (and underlying join) which might be …
(edit) @2934   9 years Peter check that compiled and linked versions are the same
(edit) @2933   9 years Peter avoid transfer exception between threads. Print as early as possible. …
(edit) @2931   9 years Peter add test that configure --without-samtools within maintainer-check
(edit) @2930   9 years Peter fix typo and ensure directory exists bfore creating file in it.
(edit) @2929   9 years Peter add EXIT_SKIP macro. make test compile also --without-samtools
(edit) @2928   9 years Peter Support different styles of including bam header files: <bam.h>, …
(edit) @2926   9 years Jari Häkkinen Added missing include
(edit) @2925   9 years Peter let bam files depend on Makefile to 1) regenerate bam files when rules …
(edit) @2924   9 years Peter cater for older samtools without support for '-o' switch
(edit) @2923   9 years Jari Häkkinen Adding missing include
(edit) @2922   9 years Peter mention samtools and zlib in README.
(copy) @2920   9 years Peter New stable branch for 0.10.x
copied from trunk:
(edit) @2919   9 years Peter update copyright years
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