|
|
|
@3095
|
10 years |
Peter |
Prepare release 0.10.3
|
|
|
|
@3094
|
10 years |
Peter |
update copyright years
|
|
|
|
@3093
|
10 years |
Peter |
implement replace(3), which fixes #768
|
|
|
|
@3022
|
11 years |
Peter |
avoid running mc-local targets in parallel (as they conflict with each …
|
|
|
|
@3021
|
11 years |
Peter |
fix script to do what's intended
|
|
|
|
@3020
|
11 years |
Peter |
fix typo
|
|
|
|
@3019
|
11 years |
Peter |
bumping version to 0.10.3pre
|
|
|
|
@3016
|
11 years |
Peter |
avoid make warnings in parallel build
|
|
|
|
@3015
|
11 years |
Peter |
prefer April not Apr in NEWS
|
|
|
|
@3014
|
11 years |
Peter |
update copyright years
|
|
|
|
@3013
|
11 years |
Peter |
preparing 0.10.2 release
|
|
|
|
@3012
|
11 years |
Peter |
typo
|
|
|
|
@3011
|
11 years |
Peter |
leftover from prev commit
|
|
|
|
@3010
|
11 years |
Peter |
move components in tag_and_release to make target so Make variables …
|
|
|
|
@3009
|
11 years |
Peter |
soften installcheck on html docs
|
|
|
|
@3008
|
11 years |
Peter |
avoid spurious test error: use yat-config --ldflags when linking. refs #745
|
|
|
|
@3003
|
11 years |
Peter |
prefer flat_namespace on darwin (OSX). refs #745
|
|
|
|
@3000
|
11 years |
Peter |
fixes bug in KolmogorovSmirnov::remove. closes #753.
|
|
|
|
@2997
|
11 years |
Peter |
improve error message
|
|
|
|
@2996
|
11 years |
Peter |
docs typo
|
|
|
|
@2991
|
11 years |
Peter |
avoid path problem when MKDIR_P is defined as install-sh
|
|
|
|
@2979
|
11 years |
Peter |
extending test for BamRead::cigar
|
|
|
|
@2977
|
11 years |
Peter |
fixes #749. turn off assertions (default).
|
|
|
|
@2974
|
11 years |
Jari Häkkinen |
Addresses #747
|
|
|
|
@2972
|
11 years |
Peter |
refs #745. Implement a workaround when bam_nt16_rev_table is not …
|
|
|
|
@2971
|
11 years |
Peter |
make docs more vaguer on behaviour of bam iterators working on same …
|
|
|
|
@2970
|
11 years |
Peter |
surround test1 call with #ifdef HAVE_LIBBAM since test1 is not …
|
|
|
|
@2969
|
11 years |
Peter |
update copyright years
|
|
|
|
@2968
|
11 years |
Peter |
add doxygen relates tag
|
|
|
|
@2967
|
11 years |
Jari Häkkinen |
Includes needed in openSUSE 12.2
|
|
|
|
@2965
|
11 years |
Peter |
add doxygen tag relates for BamRead?
|
|
|
|
@2962
|
11 years |
Peter |
fixes #743
|
|
|
|
@2961
|
11 years |
Peter |
post release admin
|
|
|
|
@2958
|
11 years |
Peter |
prepare release 0.10.1
|
|
|
|
@2957
|
11 years |
Peter |
update copyright years
|
|
|
|
@2956
|
11 years |
Peter |
update NEWS
|
|
|
|
@2955
|
11 years |
Peter |
refs #736. Fix creation of yat.pc
|
|
|
|
@2954
|
11 years |
Peter |
fixes #733 and #736. Do not link -lbam into libyat.la, but do mention …
|
|
|
|
@2953
|
11 years |
Peter |
implement BamHeader::target_length(). fixes #740
|
|
|
|
@2947
|
11 years |
Peter |
#define/#undef HAVE_SAMTOOL_BAM_H in config_public.h.in and remove …
|
|
|
|
@2944
|
11 years |
Peter |
bumping version to 0.10.1pre
|
|
|
|
@2941
|
11 years |
Peter |
correct typo
|
|
|
|
@2940
|
11 years |
Peter |
update copyright years
|
|
|
|
@2939
|
11 years |
Peter |
Prepare 0.10 release
|
|
|
|
@2938
|
11 years |
Peter |
unset some make variables in tests. fixes #731
|
|
|
|
@2937
|
11 years |
Peter |
improve doc
|
|
|
|
@2936
|
11 years |
Peter |
avoid repeating code
|
|
|
|
@2935
|
11 years |
Peter |
avoid multiple calls to join_all (and underlying join) which might be …
|
|
|
|
@2934
|
11 years |
Peter |
check that compiled and linked versions are the same
|
|
|
|
@2933
|
11 years |
Peter |
avoid transfer exception between threads. Print as early as possible. …
|
|
|
|
@2931
|
11 years |
Peter |
add test that configure --without-samtools within maintainer-check
|
|
|
|
@2930
|
11 years |
Peter |
fix typo and ensure directory exists bfore creating file in it.
|
|
|
|
@2929
|
11 years |
Peter |
add EXIT_SKIP macro. make test compile also --without-samtools
|
|
|
|
@2928
|
11 years |
Peter |
Support different styles of including bam header files: <bam.h>, …
|
|
|
|
@2926
|
11 years |
Jari Häkkinen |
Added missing include
|
|
|
|
@2925
|
11 years |
Peter |
let bam files depend on Makefile to 1) regenerate bam files when rules …
|
|
|
|
@2924
|
11 years |
Peter |
cater for older samtools without support for '-o' switch
|
|
|
|
@2923
|
11 years |
Jari Häkkinen |
Adding missing include
|
|
|
|
@2922
|
11 years |
Peter |
mention samtools and zlib in README.
|
|
|
|
@2920
|
11 years |
Peter |
New stable branch for 0.10.x
|
|
|
|
