source: branches/0.12-stable

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Diff Rev Age Author Log Message
(edit) @3343   7 years Peter bumping version to 0.12.3pre
(edit) @3340   7 years Peter Preparing release 0.12.2
(edit) @3339   7 years Peter Fix problem that Aligner::member_ is not cleared to 'none' before …
(edit) @3338   7 years Peter closes #819. Fixes docs.
(edit) @3321   7 years Peter fixes bug #815
(edit) @3307   7 years Peter bump version to 0.12.2pre
(edit) @3304   7 years Peter Preparing release 0.12.1
(edit) @3303   7 years Peter New macro YAT_FUNC_BAM_CALEND, which checks if function bam_calend is …
(edit) @3302   7 years Peter add test for BamRead::end(). Use samtools' bam_calend if …
(edit) @3301   7 years Peter refs #810. minor corrections
(edit) @3300   7 years Peter BAM_CBACK is not #defined in older versions of bam.h. refs #810
(edit) @3296   7 years Peter bump version to 0.12.1pre
(edit) @3293   7 years Peter update copyright years
(edit) @3292   7 years Peter Preparing release 0.12
(edit) @3291   7 years Jari Häkkinen Getting rid of clang warning 'unsequenced modification and access to …
(edit) @3284   7 years Peter fixes #804
(edit) @3275   7 years Peter revert r3271 and 3272; the change was dangerous since boost::facade …
(edit) @3272   7 years Peter record r3271 in NEWS
(edit) @3271   7 years Peter According to boost docs [1] iterators' value type cannot be const. For …
(edit) @3265   7 years Peter Try to get rid of clang warning: 'unsequenced modification and access …
(edit) @3264   7 years Peter avoid clang compiler warning: 'equality comparison result unused …
(edit) @3263   7 years Peter typo in PP guard (caught by clang)
(edit) @3262   7 years Peter boost::Convertible<X, Y> with X being a reference causes compiler …
(edit) @3261   7 years Peter newer versions of doxygen (1.8.7) complain when using same label in …
(edit) @3260   7 years Jari Häkkinen Adding #includes needed on Mac OSX 10.9 Mavericks
(edit) @3235   8 years Peter fix some copy n paste in previous revision, and removed some includes …
(edit) @3234   8 years Peter fixes #797
(edit) @3222   8 years Peter prefer tp declare functions alphabetically. Implement …
(edit) @3221   8 years Peter deprecate BamRead::cigar(vector<uint32_t>) and provide a new function …
(copy) @3218   8 years Peter New stable branch 0.12
copied from trunk:
(edit) @3217   8 years Peter update copyright years
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