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Diff Rev Age Author Log Message
(edit) @2958   9 years Peter prepare release 0.10.1
(edit) @2957   9 years Peter update copyright years
(edit) @2956   9 years Peter update NEWS
(edit) @2955   9 years Peter refs #736. Fix creation of yat.pc
(edit) @2954   9 years Peter fixes #733 and #736. Do not link -lbam into libyat.la, but do mention …
(edit) @2953   9 years Peter implement BamHeader::target_length(). fixes #740
(edit) @2947   9 years Peter #define/#undef HAVE_SAMTOOL_BAM_H in config_public.h.in and remove …
(edit) @2944   9 years Peter bumping version to 0.10.1pre
(edit) @2941   9 years Peter correct typo
(edit) @2940   9 years Peter update copyright years
(edit) @2939   9 years Peter Prepare 0.10 release
(edit) @2938   9 years Peter unset some make variables in tests. fixes #731
(edit) @2937   9 years Peter improve doc
(edit) @2936   9 years Peter avoid repeating code
(edit) @2935   9 years Peter avoid multiple calls to join_all (and underlying join) which might be …
(edit) @2934   9 years Peter check that compiled and linked versions are the same
(edit) @2933   9 years Peter avoid transfer exception between threads. Print as early as possible. …
(edit) @2931   9 years Peter add test that configure --without-samtools within maintainer-check
(edit) @2930   9 years Peter fix typo and ensure directory exists bfore creating file in it.
(edit) @2929   9 years Peter add EXIT_SKIP macro. make test compile also --without-samtools
(edit) @2928   9 years Peter Support different styles of including bam header files: <bam.h>, …
(edit) @2926   9 years Jari Häkkinen Added missing include
(edit) @2925   9 years Peter let bam files depend on Makefile to 1) regenerate bam files when rules …
(edit) @2924   9 years Peter cater for older samtools without support for '-o' switch
(edit) @2923   9 years Jari Häkkinen Adding missing include
(edit) @2922   9 years Peter mention samtools and zlib in README.
(edit) @2920   9 years Peter New stable branch for 0.10.x
(edit) @2917   9 years Peter bump version to 0.9.3pre
(edit) @2914   9 years Peter setting release date
(edit) @2913   9 years Peter Preparing release 0.9.2
(edit) @2885   9 years Peter fixes #728
(edit) @2860   9 years Peter mention configure options '--with-boost-thread' and …
(edit) @2855   9 years Peter revert r2829 for m4 boost macros because it depends on tool tac, which …
(edit) @2854   9 years Peter bump version to 0.9.2pre
(edit) @2851   9 years Peter ensure that we build docs within mc_installcheck as installcheck now …
(edit) @2850   9 years Peter mention current version in list of libtool numbers
(edit) @2849   9 years Peter update copyright years
(edit) @2848   9 years Peter Preparing release 0.9.1
(edit) @2847   9 years Peter Fixes #724. Adding another test for NeedlemanWunsch?. Fix bug in NW …
(edit) @2846   9 years Peter Merged r2845 into 0.9.x branch and marked alignment.test as XFAIL. …
(edit) @2845   9 years Peter Extend test for NeedlemanWunsch? and check alignment score between …
(edit) @2844   9 years Peter add test for #723 and implement a fix. Fixes #723
(edit) @2843   9 years Peter fixes #722
(edit) @2841   9 years Peter fixes #721. fix install-html-local rule and add a install-check rule …
(edit) @2840   9 years Peter bump version to 0.9.1pre
(edit) @2839   9 years Peter add missing '.' as we want version number A.B.C rather than A.BC
(edit) @2835   9 years Peter spell out 0.9 rather than intruction template A.B
(edit) @2834   9 years Peter update release date
(edit) @2833   9 years Peter fixes #720
(edit) @2832   9 years Peter Preparing release 0.9
(edit) @2831   9 years Peter remove debug code
(edit) @2830   9 years Peter add link tests with boost. closes #719
(edit) @2829   9 years Peter upgrade to latest AX version. backport r2825
(edit) @2826   9 years Peter avoid warning from GCC 4.1
(edit) @2822   9 years Peter new stable branch for 0.9.x
(edit) @2813   9 years Peter update copyright years
(edit) @2812   9 years Peter bump version numbers
(edit) @2811   9 years Jari Häkkinen Resolving precision issues on my macbook pro.
(edit) @2796   9 years Peter update copyright years
(edit) @2795   9 years Peter update release date in NEWS
(edit) @2794   9 years Peter move distclean of doxygen.mk files to doc/makefile. fixes #715
(edit) @2791   9 years Peter Preparing release 0.8.2
(edit) @2771   9 years Peter improve English in announcement
(edit) @2765   9 years Peter update copyright years
(edit) @2764   9 years Peter set svncopyright property
(edit) @2756   9 years Peter document bug #709 in NEWS
(edit) @2755   9 years Peter fixes #709
(edit) @2713   10 years Peter typo in release script
(edit) @2704   10 years Peter bumping version to 0.8.2pre
(edit) @2701   10 years Peter document lt number
(edit) @2700   10 years Peter update copyright years
(edit) @2699   10 years Peter preparing release 0.8.1
(edit) @2685   10 years Peter skip test when root. fixes #700
(edit) @2684   10 years Peter document bug #697 in NEWS
(edit) @2683   10 years Peter fixes #697
(edit) @2682   10 years Peter extend test. refs #697
(edit) @2681   10 years Peter improve docs. fixes #698
(edit) @2676   10 years Peter correct typo
(edit) @2675   10 years Peter fix libtool invocation in tag and release script
(edit) @2674   10 years Peter bump version to 0.8.1pre
(edit) @2671   10 years Peter prepare release 0.8
(edit) @2670   10 years Peter remove trailing WS
(edit) @2669   10 years Peter only try intel specific option when using intel compiler option.
(edit) @2668   10 years Peter try to turn off -pedantic and -Wall when using non-GCC. refs #684
(edit) @2667   10 years Peter include <locale> and remove some extra WS
(edit) @2666   10 years Peter fixes #695, added check in convert<unsigned type> that string cannot …
(edit) @2665   10 years Peter add test for ticket #695 (refs #695)
(edit) @2664   10 years Peter turn on -Wall -pedantic only when using gcc. closes #684
(edit) @2659   10 years Peter avoid warning from intel compiler
(edit) @2658   10 years Peter fix bug in commandline test
(edit) @2657   10 years Peter fixes #687. Add an autoconf test to test this case and remove the …
(edit) @2656   10 years Peter skip yat_msg_error tests when autoconf version < 2.64 (possibly more …
(edit) @2655   10 years Peter avoid compilation errors with gcc3
(edit) @2625   10 years Peter fixes #685
(edit) @2624   10 years Peter avoid gcc (4.1) warning on Linux
(edit) @2621   10 years Peter backporting changeset [2620] to 0.7-stable branch. closes #681
(edit) @2620   10 years Peter avoid problem with tied time-stamps in creation of doxygen.mk. refs #681
(edit) @2619   10 years Peter add include so it compiles on william
(edit) @2618   10 years Peter increase portability (see autoconf manual 12.1)
(edit) @2616   10 years Peter New minor version 0.8 branch
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