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Diff Rev Age Author Log Message
(edit) @3161   8 years Peter fix docs so doxygen can parse correctly
(edit) @3159   8 years Peter fixed docs typo
(edit) @3158   8 years Peter improve docs for BamHeader?
(edit) @3156   8 years Peter update copyright years
(edit) @3155   8 years Peter fixes #777. Make doxygen ignore internal stuff
(edit) @3146   8 years Peter fixed docs
(edit) @3145   8 years Peter bumping version to 0.11.2pre
(edit) @3142   8 years Peter prepare release
(edit) @3141   8 years Peter record bug #776 in NEWS
(edit) @3140   8 years Peter fixes #776 a bug in function BamHeader::tid
(edit) @3132   8 years Peter move ReleaseProcedure to file README.developer
(edit) @3131   8 years Peter bump version to 0.11.1pre
(edit) @3128   8 years Peter prepare 0.11 release
(edit) @3127   8 years Peter update copyright years
(edit) @3126   8 years Jari Häkkinen Relaxing requirement on autoconf, tests passes with 2.63
(edit) @3125   8 years Peter try <bam.h> before <bam/bam.h>
(edit) @3124   8 years Peter avoid using m4_map_args_w, which doesn't work with autoconf 2.63
(edit) @3123   8 years Peter turn off test that linking against a static lib when creating a …
(edit) @3122   8 years Peter define libdir directly rather than via prefix
(edit) @3121   8 years Peter always abort if command fails
(edit) @3120   8 years Jari Häkkinen Fixing disambiguity of -i option om mac (on mac a of another option …
(edit) @3119   8 years Jari Häkkinen Removing html code disrupting crosslink with doxygen 1.8.5 on my mac.
(edit) @3116   8 years Peter New stable branch for 0.11.x series
(edit) @3097   8 years Peter bumping version to 0.10.4pre
(edit) @3095   8 years Peter Prepare release 0.10.3
(edit) @3094   8 years Peter update copyright years
(edit) @3093   8 years Peter implement replace(3), which fixes #768
(edit) @3022   9 years Peter avoid running mc-local targets in parallel (as they conflict with each …
(edit) @3021   9 years Peter fix script to do what's intended
(edit) @3020   9 years Peter fix typo
(edit) @3019   9 years Peter bumping version to 0.10.3pre
(edit) @3016   9 years Peter avoid make warnings in parallel build
(edit) @3015   9 years Peter prefer April not Apr in NEWS
(edit) @3014   9 years Peter update copyright years
(edit) @3013   9 years Peter preparing 0.10.2 release
(edit) @3012   9 years Peter typo
(edit) @3011   9 years Peter leftover from prev commit
(edit) @3010   9 years Peter move components in tag_and_release to make target so Make variables …
(edit) @3009   9 years Peter soften installcheck on html docs
(edit) @3008   9 years Peter avoid spurious test error: use yat-config --ldflags when linking. refs #745
(edit) @3003   9 years Peter prefer flat_namespace on darwin (OSX). refs #745
(edit) @3000   9 years Peter fixes bug in KolmogorovSmirnov::remove. closes #753.
(edit) @2997   9 years Peter improve error message
(edit) @2996   9 years Peter docs typo
(edit) @2991   9 years Peter avoid path problem when MKDIR_P is defined as install-sh
(edit) @2979   9 years Peter extending test for BamRead::cigar
(edit) @2977   9 years Peter fixes #749. turn off assertions (default).
(edit) @2974   9 years Jari Häkkinen Addresses #747
(edit) @2973   9 years Jari Häkkinen Adresses #747
(edit) @2972   9 years Peter refs #745. Implement a workaround when bam_nt16_rev_table is not …
(edit) @2971   9 years Peter make docs more vaguer on behaviour of bam iterators working on same …
(edit) @2970   9 years Peter surround test1 call with #ifdef HAVE_LIBBAM since test1 is not …
(edit) @2969   9 years Peter update copyright years
(edit) @2968   9 years Peter add doxygen relates tag
(edit) @2967   9 years Jari Häkkinen Includes needed in openSUSE 12.2
(edit) @2965   9 years Peter add doxygen tag relates for BamRead?
(edit) @2962   9 years Peter fixes #743
(edit) @2961   9 years Peter post release admin
(edit) @2958   9 years Peter prepare release 0.10.1
(edit) @2957   9 years Peter update copyright years
(edit) @2956   9 years Peter update NEWS
(edit) @2955   9 years Peter refs #736. Fix creation of yat.pc
(edit) @2954   9 years Peter fixes #733 and #736. Do not link -lbam into libyat.la, but do mention …
(edit) @2953   9 years Peter implement BamHeader::target_length(). fixes #740
(edit) @2947   9 years Peter #define/#undef HAVE_SAMTOOL_BAM_H in config_public.h.in and remove …
(edit) @2944   9 years Peter bumping version to 0.10.1pre
(edit) @2941   9 years Peter correct typo
(edit) @2940   9 years Peter update copyright years
(edit) @2939   9 years Peter Prepare 0.10 release
(edit) @2938   9 years Peter unset some make variables in tests. fixes #731
(edit) @2937   9 years Peter improve doc
(edit) @2936   9 years Peter avoid repeating code
(edit) @2935   9 years Peter avoid multiple calls to join_all (and underlying join) which might be …
(edit) @2934   9 years Peter check that compiled and linked versions are the same
(edit) @2933   9 years Peter avoid transfer exception between threads. Print as early as possible. …
(edit) @2931   9 years Peter add test that configure --without-samtools within maintainer-check
(edit) @2930   9 years Peter fix typo and ensure directory exists bfore creating file in it.
(edit) @2929   9 years Peter add EXIT_SKIP macro. make test compile also --without-samtools
(edit) @2928   9 years Peter Support different styles of including bam header files: <bam.h>, …
(edit) @2926   9 years Jari Häkkinen Added missing include
(edit) @2925   9 years Peter let bam files depend on Makefile to 1) regenerate bam files when rules …
(edit) @2924   9 years Peter cater for older samtools without support for '-o' switch
(edit) @2923   9 years Jari Häkkinen Adding missing include
(edit) @2922   9 years Peter mention samtools and zlib in README.
(edit) @2920   9 years Peter New stable branch for 0.10.x
(edit) @2917   9 years Peter bump version to 0.9.3pre
(edit) @2914   9 years Peter setting release date
(edit) @2913   9 years Peter Preparing release 0.9.2
(edit) @2885   9 years Peter fixes #728
(edit) @2860   9 years Peter mention configure options '--with-boost-thread' and …
(edit) @2855   9 years Peter revert r2829 for m4 boost macros because it depends on tool tac, which …
(edit) @2854   9 years Peter bump version to 0.9.2pre
(edit) @2851   9 years Peter ensure that we build docs within mc_installcheck as installcheck now …
(edit) @2850   9 years Peter mention current version in list of libtool numbers
(edit) @2849   9 years Peter update copyright years
(edit) @2848   9 years Peter Preparing release 0.9.1
(edit) @2847   9 years Peter Fixes #724. Adding another test for NeedlemanWunsch?. Fix bug in NW …
(edit) @2846   9 years Peter Merged r2845 into 0.9.x branch and marked alignment.test as XFAIL. …
(edit) @2845   9 years Peter Extend test for NeedlemanWunsch? and check alignment score between …
(edit) @2844   9 years Peter add test for #723 and implement a fix. Fixes #723
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