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Diff Rev Age Author Log Message
(edit) @4318   8 months Peter make test compile on CentOS.
(edit) @4317   8 months Peter bumping version to 0.20.3pre
(edit) @4314   8 months Peter update copyright years
(edit) @4313   8 months Peter Preparing release 0.20.2
(edit) @4311   8 months Peter fixes #995. If key is present, clear the value before appending the …
(edit) @4310   8 months Peter refs #995. Add tests for the case.
(edit) @4309   8 months Peter bump version to 0.20.2pre
(edit) @4306   8 months Peter update copyright years
(edit) @4305   8 months Peter Preparing release 0.20.1
(edit) @4304   8 months Peter mention #994 in NEWS
(edit) @4303   8 months Peter fixes #994
(edit) @4302   8 months Peter add test for bug in VcfHeader? (refs #994).
(edit) @4301   8 months Peter docs: fix typo
(edit) @4300   8 months Peter Fixed a bug in NeedlemanWunsch? functions caused by an unsigned integer …
(edit) @4283   8 months Peter fix spurious test failure due to numerical problems when taking …
(edit) @4282   8 months Peter refs #992; add test for bug.
(edit) @4253   11 months Peter Bumping VERSION to 0.20.1pre
(edit) @4250   11 months Peter updating copyright years
(edit) @4249   11 months Peter Preparing release 0.20
(edit) @4248   12 months Peter change API on MultiMinimizer? and MultiMinimizerDerivative? to same as …
(edit) @4247   12 months Peter change API of Minimizer to same as RootFinder?, using a polymorphic …
(edit) @4246   12 months Peter implement functor calculating the score (derivative of logL) and its …
(edit) @4244   13 months Peter fix distcheck
(edit) @4243   13 months Peter fix compilation with GCC 9
(edit) @4242   13 months Peter turn off deprecation warning in test.
(edit) @4241   13 months Peter turn on deprecation warning also with modern GCC.
(edit) @4240   13 months Peter refs #985. Use RootFinderDerivative? rather than boost::newton_raphson. …
(edit) @4239   13 months Peter fix typo. refs #985
(edit) @4238   13 months Peter Add wrapper classes around GSL One-Dimnesional Root-Finding algorithms …
(edit) @4237   13 months Peter Add wrapper classes around GSL One-Dimensional Root Bracketing …
(edit) @4236   13 months Peter avoid compiler warning and YAT_ASSERT with gcc 11
(edit) @4235   13 months Peter remove COLS_IN_ALPHA_INDEX to avoid warning from doxygen 1.9.1
(edit) @4234   13 months Jari Häkkinen Replaced shuffle function call to avoid C++17 compilation failure
(edit) @4233   13 months Jari Häkkinen Added extra parentheses to make clang++ compiler happy
(edit) @4232   13 months Peter add tests for random_shuffle
(edit) @4231   13 months Peter docs: fix typo
(edit) @4230   13 months Peter refs #985. Change name from Brent to BrentMinimizer? to allow the name …
(edit) @4229   13 months Peter mention new boost version requirement in NEWS.
(edit) @4228   13 months Peter Require boost 1.66. As mentiuoned in #967, the gzip decompressor in …
(edit) @4227   13 months Jari Häkkinen Replacing deprecated functions
(edit) @4226   13 months Jari Häkkinen Changing boost include directives to avoid deprecation message at …
(edit) @4225   13 months Jari Häkkinen Added missing include
(edit) @4224   13 months Peter change default stopping criteria to avoid fetting stuck
(edit) @4223   13 months Peter remove debug printout
(edit) @4222   13 months Peter add wrapper classes around GSL's univariate minimisation algorithms.
(edit) @4221   13 months Peter no need to specify yat:: namespace when within yat namespace
(edit) @4220   13 months Peter fix bug that potential failure was not recorded.
(edit) @4219   13 months Jari Häkkinen Fixed typo
(edit) @4218   13 months Peter remove outcommented code
(edit) @4217   13 months Peter fix bug that exit value was ignoring status of test::suite class …
(edit) @4215   13 months Peter docs: leftover from splitting Matrix class to several classes; …
(edit) @4214   13 months Peter add dependency for lazycheck
(edit) @4213   13 months Peter test/multiprocess failed when no bcftools was available. Move code …
(edit) @4212   13 months Peter docs: avoid doxygen warning; don't use label @return for a void …
(edit) @4211   13 months Jari Häkkinen Removing -P option from tests since -P is not recognized by MacOS …
(edit) @4210   13 months Peter avoid accessing vector element out of bounds when length is 1; prefer …
(edit) @4208   13 months Peter New stable branch 0.20
(edit) @4205   13 months Peter Bumping VERSION to 0.19.3pre
(edit) @4202   13 months Peter updating copyright years
(edit) @4201   13 months Peter Preparing release 0.19.2
(edit) @4168   19 months Peter mention r4167 in NEWS
(edit) @4167   19 months Peter When a second exception was thrown, the JobHandler? would handle it …
(edit) @4165   19 months Peter Bumping version to 0.19.2pre
(edit) @4162   19 months Peter add line for 0.19.1
(edit) @4161   19 months Peter update copyright years
(edit) @4160   19 months Peter Preparing release 0.19.1
(edit) @4159   19 months Peter mention #980, #981 and #982 in NEWS. (refs #980, #981 and #982)
(edit) @4158   19 months Peter fixes #982
(edit) @4157   19 months Peter fixes #981
(edit) @4156   19 months Peter refs #980. Test was inci=omplete in r4155. Fixed here.
(edit) @4155   19 months Peter fixes #980
(edit) @4151   19 months Peter fix bug UnityScaler? used std::accumulate but did not include <numeric>.
(edit) @4123   21 months Peter remove old debug printout
(edit) @4122   22 months Peter extend test with call to VCF::Info::count(1)
(edit) @4112   2 years Peter bump lt-version-info post-release, noy just before.
(edit) @4111   2 years Peter bumping version to 0.19.1pre
(edit) @4108   2 years Peter update copyright years
(edit) @4107   2 years Peter Preparing release 0.19
(edit) @4103   2 years Peter closes #710
(edit) @4100   2 years Peter refs #710; activate tests and set XFAIL
(edit) @4093   2 years Peter update RP to match changes on the wiki
(edit) @4092   2 years Peter prefer https when referring to ~jari/documents pages; mention function …
(edit) @4090   2 years Peter New stable branch 0.19
(edit) @4084   2 years Peter removing obsolete branch for kendall score (refs #710).
(edit) @4082   2 years Peter add missing file; refs #710
(edit) @4081   2 years Peter grammar
(edit) @4080   2 years Peter speedup
(edit) @4079   2 years Peter store the right_most node, so it can be accessed in constant time …
(edit) @4077   2 years Peter implement insert with hint; refs #710
(edit) @4075   2 years Peter fix some docs and get rid of function not used. refs #710
(edit) @4074   2 years Peter add a destructor; refs #710
(edit) @4073   2 years Peter delete erased node
(edit) @4072   2 years Peter rebalance tree after insertion/deletion in case it's needed; moved the …
(edit) @4071   2 years Peter Add variables height_ and size_ in NodeBase?, which describes the …
(edit) @4070   2 years Peter refs #710; add erase functions
(edit) @4069   2 years Peter implement copy and move constructors/assignment
(edit) @4068   2 years Peter implement move constructor and assignment for Kendall class.
(edit) @4067   2 years Peter docs
(edit) @4066   2 years Peter merge trunk changes into branch
(edit) @4065   2 years Peter fix documentation; refs #710
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