# # ChangeLog for trunk/c++_tools/utility # # Generated by Trac 1.2.3 # May 17, 2022, 2:08:47 PM Thu, 31 Aug 2006 08:52:02 GMT Jari Häkkinen [616] * trunk/c++_tools/Makefile.am (modified) * trunk/c++_tools/classifier/ConsensusInputRanker.cc (modified) * trunk/c++_tools/classifier/EnsembleBuilder.cc (modified) * trunk/c++_tools/classifier/GaussianKernelFunction.cc (modified) * trunk/c++_tools/classifier/GaussianKernelFunction.h (modified) * trunk/c++_tools/classifier/IGP.cc (modified) * trunk/c++_tools/classifier/IGP.h (modified) * trunk/c++_tools/classifier/Kernel.h (modified) * trunk/c++_tools/classifier/KernelWeighted_SEV.cc (modified) * trunk/c++_tools/classifier/KernelWeighted_SEV.h (modified) * trunk/c++_tools/classifier/Kernel_MEV.h (modified) * trunk/c++_tools/classifier/Kernel_SEV.cc (modified) * trunk/c++_tools/classifier/Kernel_SEV.h (modified) * trunk/c++_tools/classifier/MatrixLookup.cc (modified) * trunk/c++_tools/classifier/MatrixLookup.h (modified) * trunk/c++_tools/classifier/MatrixLookupWeighted.cc (modified) * trunk/c++_tools/classifier/MatrixLookupWeighted.h (modified) * trunk/c++_tools/classifier/NCC.cc (modified) * trunk/c++_tools/classifier/NCC.h (modified) * trunk/c++_tools/classifier/PolynomialKernelFunction.cc (modified) * trunk/c++_tools/classifier/SVM.cc (modified) * trunk/c++_tools/classifier/SVM.h (modified) * trunk/c++_tools/classifier/SupervisedClassifier.h (modified) * trunk/c++_tools/classifier/utility.cc (modified) * trunk/c++_tools/classifier/utility.h (modified) * trunk/c++_tools/gslapi (deleted) * trunk/c++_tools/statistics/Averager.cc (modified) * trunk/c++_tools/statistics/Averager.h (modified) * trunk/c++_tools/statistics/AveragerPairWeighted.h (modified) * trunk/c++_tools/statistics/AveragerWeighted.cc (modified) * trunk/c++_tools/statistics/AveragerWeighted.h (modified) * trunk/c++_tools/statistics/Distance.cc (modified) * trunk/c++_tools/statistics/Distance.h (modified) * trunk/c++_tools/statistics/Fisher.cc (modified) * trunk/c++_tools/statistics/Fisher.h (modified) * trunk/c++_tools/statistics/FoldChange.cc (modified) * trunk/c++_tools/statistics/FoldChange.h (modified) * trunk/c++_tools/statistics/Linear.cc (modified) * trunk/c++_tools/statistics/Linear.h (modified) * trunk/c++_tools/statistics/LinearWeighted.cc (modified) * trunk/c++_tools/statistics/LinearWeighted.h (modified) * trunk/c++_tools/statistics/Local.cc (modified) * trunk/c++_tools/statistics/Local.h (modified) * trunk/c++_tools/statistics/MultiDimensional.cc (modified) * trunk/c++_tools/statistics/MultiDimensional.h (modified) * trunk/c++_tools/statistics/MultiDimensionalWeighted.cc (modified) * trunk/c++_tools/statistics/MultiDimensionalWeighted.h (modified) * trunk/c++_tools/statistics/Naive.cc (modified) * trunk/c++_tools/statistics/Naive.h (modified) * trunk/c++_tools/statistics/NaiveWeighted.cc (modified) * trunk/c++_tools/statistics/NaiveWeighted.h (modified) * trunk/c++_tools/statistics/OneDimensional.h (modified) * trunk/c++_tools/statistics/OneDimensionalWeighted.h (modified) * trunk/c++_tools/statistics/Pearson.cc (modified) * trunk/c++_tools/statistics/Pearson.h (modified) * trunk/c++_tools/statistics/PearsonDistance.cc (modified) * trunk/c++_tools/statistics/PearsonDistance.h (modified) * trunk/c++_tools/statistics/Polynomial.cc (modified) * trunk/c++_tools/statistics/Polynomial.h (modified) * trunk/c++_tools/statistics/PolynomialWeighted.cc (modified) * trunk/c++_tools/statistics/PolynomialWeighted.h (modified) * trunk/c++_tools/statistics/ROC.cc (modified) * trunk/c++_tools/statistics/ROC.h (modified) * trunk/c++_tools/statistics/SNR.cc (modified) * trunk/c++_tools/statistics/SNR.h (modified) * trunk/c++_tools/statistics/Score.h (modified) * trunk/c++_tools/statistics/WilcoxonFoldChange.cc (modified) * trunk/c++_tools/statistics/WilcoxonFoldChange.h (modified) * trunk/c++_tools/statistics/tScore.cc (modified) * trunk/c++_tools/statistics/tScore.h (modified) * trunk/c++_tools/statistics/utility.cc (modified) * trunk/c++_tools/statistics/utility.h (modified) * trunk/c++_tools/utility/Alignment.cc (modified) * trunk/c++_tools/utility/Alignment.h (modified) * trunk/c++_tools/utility/Makefile.am (modified) * trunk/c++_tools/utility/NNI.cc (modified) * trunk/c++_tools/utility/NNI.h (modified) * trunk/c++_tools/utility/PCA.cc (modified) * trunk/c++_tools/utility/PCA.h (modified) * trunk/c++_tools/utility/SVD.cc (modified) * trunk/c++_tools/utility/SVD.h (modified) * trunk/c++_tools/utility/WeNNI.cc (modified) * trunk/c++_tools/utility/WeNNI.h (modified) * trunk/c++_tools/utility/kNNI.cc (modified) * trunk/c++_tools/utility/kNNI.h (modified) * trunk/c++_tools/utility/matrix.cc (copied) * trunk/c++_tools/utility/matrix.h (copied) * trunk/c++_tools/utility/utility.cc (modified) * trunk/c++_tools/utility/utility.h (modified) * trunk/c++_tools/utility/vector.cc (copied) * trunk/c++_tools/utility/vector.h (copied) * trunk/test/alignment_test.cc (modified) * trunk/test/averager_test.cc (modified) * trunk/test/consensus_inputranker_test.cc (modified) * trunk/test/crossvalidation_test.cc (modified) * trunk/test/data_lookup_1d_test.cc (modified) * trunk/test/ensemble_test.cc (modified) * trunk/test/inputranker_test.cc (modified) * trunk/test/kernel_lookup_test.cc (modified) * trunk/test/kernel_test.cc (modified) * trunk/test/matrix_lookup_test.cc (modified) * trunk/test/matrix_test.cc (modified) * trunk/test/ncc_test.cc (modified) * trunk/test/nni_test.cc (modified) * trunk/test/pca_test.cc (modified) * trunk/test/regression_test.cc (modified) * trunk/test/score_test.cc (modified) * trunk/test/statistics_test.cc (modified) * trunk/test/svd_test.cc (modified) * trunk/test/svm_test.cc (modified) * trunk/test/vector_test.cc (modified) Removed gslapi namespace and put the code into utility namespace. ... Wed, 30 Aug 2006 08:49:45 GMT Markus Ringnér [609] * trunk/c++_tools/utility/utility.cc (modified) * trunk/test/Makefile.am (modified) * trunk/test/utility_test.cc (added) Fixes #98 Tue, 29 Aug 2006 03:10:05 GMT Peter [602] * trunk/c++_tools/utility/CommandLine.h (modified) closes #99 documentation on CommandLine class Tue, 29 Aug 2006 01:45:59 GMT Peter [601] * trunk/c++_tools/utility/CommandLine.cc (modified) * trunk/c++_tools/utility/CommandLine.h (modified) * trunk/c++_tools/utility/Option.cc (modified) * trunk/c++_tools/utility/Option.h (modified) set properties on CommandLine and Option files Tue, 29 Aug 2006 01:28:29 GMT Peter [598] * trunk/c++_tools/utility/CommandLine.cc (modified) * trunk/c++_tools/utility/CommandLine.h (modified) * trunk/c++_tools/utility/Option.cc (modified) * trunk/c++_tools/utility/Option.h (modified) Changed interface of CommandLine so short option is set with char. ... Mon, 28 Aug 2006 13:03:54 GMT Markus Ringnér [597] * trunk/c++_tools/classifier/ConsensusInputRanker.h (modified) * trunk/c++_tools/classifier/Kernel.h (modified) * trunk/c++_tools/classifier/KernelLookup.h (modified) * trunk/c++_tools/classifier/KernelWeighted_MEV.h (modified) * trunk/c++_tools/classifier/KernelWeighted_SEV.h (modified) * trunk/c++_tools/classifier/Kernel_MEV.h (modified) * trunk/c++_tools/classifier/Kernel_SEV.h (modified) * trunk/c++_tools/classifier/MatrixLookupWeighted.h (modified) * trunk/c++_tools/classifier/SVM.h (modified) * trunk/c++_tools/gslapi/matrix.h (modified) * trunk/c++_tools/gslapi/vector.h (modified) * trunk/c++_tools/statistics/Averager.h (modified) * trunk/c++_tools/statistics/AveragerPair.h (modified) * trunk/c++_tools/statistics/Pearson.h (modified) * trunk/c++_tools/statistics/tScore.h (modified) * trunk/c++_tools/utility/SVD.h (modified) Fixed comments so they pass without some of the complaits from ... Mon, 28 Aug 2006 07:47:51 GMT Peter [594] * trunk/c++_tools/utility/CommandLine.cc (added) * trunk/c++_tools/utility/CommandLine.h (added) * trunk/c++_tools/utility/Makefile.am (modified) * trunk/c++_tools/utility/Option.cc (added) * trunk/c++_tools/utility/Option.h (added) * trunk/test/Makefile.am (modified) * trunk/test/commandline_test.cc (added) closes #91 class parsing commandline Thu, 04 May 2006 10:28:20 GMT Jari Häkkinen [580] * trunk/c++_tools/classifier/Makefile.am (modified) * trunk/c++_tools/gslapi/Makefile.am (modified) * trunk/c++_tools/random/Makefile.am (modified) * trunk/c++_tools/statistics/Makefile.am (modified) * trunk/c++_tools/utility/Makefile.am (modified) * trunk/test/Makefile.am (modified) Removed LOCAL_INCLUDES. Thu, 06 Apr 2006 22:36:45 GMT Jari Häkkinen [575] * trunk/Makefile.am (modified) * trunk/c++_tools (moved) Renaming lib to c++_tools. Wed, 05 Apr 2006 13:09:49 GMT Jari Häkkinen [570] * trunk/lib/gslapi/Makefile.am (modified) * trunk/lib/gslapi/matrix.cc (modified) * trunk/lib/gslapi/matrix.h (modified) * trunk/lib/gslapi/vector.cc (modified) * trunk/lib/gslapi/vector.h (modified) * trunk/lib/utility/Exception.h (modified) * trunk/lib/utility/FileIO.cc (modified) * trunk/lib/utility/FileIO.h (modified) * trunk/lib/utility/Makefile.am (modified) * trunk/lib/utility/NNI.cc (modified) * trunk/lib/utility/NNI.h (modified) * trunk/lib/utility/WeNNI.cc (modified) * trunk/lib/utility/WeNNI.h (modified) * trunk/lib/utility/kNNI.cc (modified) * trunk/lib/utility/kNNI.h (modified) * trunk/lib/utility/stl_utility.cc (modified) * trunk/lib/utility/stl_utility.h (modified) * trunk/lib/utility/utility.cc (modified) * trunk/lib/utility/utility.h (modified) Added copyright statement to files.