source: trunk/configure.ac

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Diff Rev Age Author Log Message
(edit) @2960   9 years Peter merge patch release 0.10.1 into trunk
(edit) @2948   9 years Peter prefer AC_SEARCH_LIBS over AC_CHECK_LIB
(edit) @2945   9 years Peter avoid warning from Automake
(edit) @2943   9 years Peter merge release 0.10 into trunk
(edit) @2891   9 years Peter check for samtools in configure; create bam file in 'make check' if we …
(edit) @2882   9 years Peter add --enable-assert option (in configure)
(edit) @2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
(edit) @2878   9 years Peter typo
(edit) @2877   9 years Peter prepend LIBS to achieve recommended -lgsl -lcblas -lm
(edit) @2876   9 years Peter avoid word enable for something that is turned off with '--without'
(edit) @2875   9 years Peter delete leftover comments
(edit) @2873   9 years Peter prefer using YAT_MSG_ERROR and simplify computation of …
(edit) @2872   9 years Peter prefer YAT_MSG_ERROR. using it in inf test
(edit) @2871   9 years Peter prefer YAT_MSG_ERROR. using it in quiet_NAN test
(edit) @2869   9 years Peter improve error messages. emove debug code. refs #729
(edit) @2868   9 years Peter refs #729. Add configure tests for samtools
(edit) @2866   9 years Peter remove -Werror option for automake
(edit) @2838   9 years Peter merge release 0.9 into trunk
(edit) @2827   9 years Peter Remove -Itop_srcdir from CPPFLAGS. Automake already adds -Isrcdir to …
(edit) @2787   9 years Peter update coyright years
(edit) @2785   9 years Peter skip boost link tests if --without-boost was provided
(edit) @2782   9 years Jari Häkkinen Addresses #714. Added check for boost system libraries. Need to link …
(edit) @2781   9 years Peter fix spurious errors in long long test. First, remove -pthread before …
(edit) @2780   9 years Peter exclude -pthread from CPPFLAGS if compiler is warning about it. closes #713
(edit) @2774   9 years Peter report long long test
(edit) @2772   9 years Peter do not ignore BOOST_CPPFLAGS set in AX_BOOST_THREAD
(edit) @2769   9 years Peter refs #568. test using multithreaded RNG
(edit) @2767   9 years Peter look for boost thread library. refs #568
(edit) @2749   9 years Peter add small convenience Makefiles in subdirs. closes #703
(edit) @2739   9 years Peter refs #703 using a non-recursive Makefile. Old Makefile.am are kept but …
(edit) @2729   10 years Peter Define version on one line in order to avoid that version change in …
(edit) @2673   10 years Peter merge release 0.8 into trunk
(edit) @2628   10 years Peter avoid aclocal warning
(edit) @2627   10 years Peter lippstick for configure output. Avoid prefix 'configure:' and add some …
(edit) @2626   10 years Peter fixes #683
(edit) @2607   10 years Peter write-protect generated file to avoid editing
(edit) @2604   10 years Peter add helper script for release procedure.
(edit) @2601   10 years Peter merge release 0.7.3 into trunk. A couple of conflict and needed fix …
(edit) @2575   10 years Peter closes #654. support for silent-rules
(edit) @2517   10 years Peter use common_defs in documentation_test. Change name to doxygen_test to …
(edit) @2487   10 years Peter Change the semantics of htmldir and where htlm docs are installed. …
(edit) @2463   11 years Peter remove deprecated configure options: --with-gsl-prefix and …
(edit) @2455   11 years Peter closes #662
(edit) @2452   11 years Peter remove test/data/Makefile. distribute small.gff3
(edit) @2438   11 years Peter Move yathello test from maintainer-check to installcheck, which means …
(edit) @2431   11 years Peter fixes #620. Move version defines from 'version.h' to …
(edit) @2418   11 years Peter fixes #655. add a helper script, gen-yat-pc.sh, that generates yat.pc. …
(edit) @2354   11 years Peter Before we generate other docs in other formats than html. Remove …
(edit) @2341   11 years Peter New namespace omic and new class omic::DNA. closes #377
(edit) @2326   11 years Peter update boost m4 macro, which now uses …
(edit) @2309   11 years Peter create dummie doxygen.mk only if it doesnt exist
(edit) @2308   11 years Peter creating dummie doxygen.mk during configure. fixes #636
(edit) @2300   11 years Peter update BUG_REPORT
(edit) @2297   11 years Peter dvi, ps, and pdf docs are no longer supported
(edit) @2266   11 years Peter use 'echo' rather than the variable ECHO decided by libtool. The …
(edit) @2264   11 years Peter prefer hard-coding name yat because it increases readability and is …
(edit) @2244   12 years Peter fixes #619
(edit) @2241   12 years Peter remove AC_PROG_INSTALL which is already called by AM_INIT_AUTOMAKE and …
(edit) @2228   12 years Peter Using the parallel-tests driver. All tests are now by default verbose, …
(edit) @2227   12 years Peter automake 1.11 is now required. refs #475
(edit) @2224   12 years Peter Lift out rule generating doxygen.mk into one common place …
(edit) @2222   12 years Peter prefer yat (lower case)
(edit) @2161   12 years Peter updating copyright years
(edit) @2153   12 years Peter refs #603. Boost 1.35 is now required
(edit) @2131   12 years Peter prefer using AC_CONFIG_HEADERS rather than AC_CONFIG_HEADER
(edit) @2129   12 years Peter New configure option 'with-gsl=DIR'. This option also accepts 'no' as …
(edit) @2128   12 years Peter remove left-over code. we are using yat_svn_release.m4 now instead.
(edit) @2120   12 years Peter fix so -Wno-long-long is turned on when included boost header use long …
(edit) @2119   12 years Peter converted files to utf-8. fixes #577
(edit) @2112   12 years Peter Note, this will likely break the Makefile; you need to run autoreconf …
(edit) @2107   12 years Peter using AC_CHECK_DECL (from autoconf) rather than AX_C_IFDEF (from …
(edit) @2104   12 years Peter replacing AC_CHECK_FILE because it doesn't allow cross-compiling.
(edit) @2103   12 years Peter merging patch release 0.5.5 into trunk. Delta 0.5.5 - 0.5.4
(edit) @2088   12 years Peter reverting r2086. Autoconf 2.63 is now needed to bootstrap yat from svn …
(edit) @2084   12 years Jari Häkkinen Addresses #570. Fixed typo but bootstrap problems persist.
(edit) @2083   12 years Peter Let user override the -D* flags that are set in configure. User can, …
(edit) @2030   12 years Peter adding project url
(edit) @2017   12 years Peter refs #349. Adding macro that checks for CBLAS library and using this …
(edit) @2012   12 years Peter output doxygen formats on one line
(edit) @2009   12 years Peter avoid polluting LIBS variable (with -lcblas) refs #518
(edit) @2007   12 years Peter adding warning in configure that latex output is disabled for doxygen 1.5.8
(edit) @1998   12 years Peter Merged patch release 0.5.4 to the trunk. Delta 0.5.4 - 0.5.3
(edit) @1978   12 years Peter refs #544. Added support for --without-boost.
(edit) @1977   12 years Peter remove obsolete error message. If we don't have a specialized libblas …
(edit) @1976   12 years Peter - acx_blas.m4 reversing back to pristine version - configure.ac …
(edit) @1958   12 years Peter remove support for make svn-clean
(edit) @1938   13 years Peter corrected detection of failured gsl test
(edit) @1917   13 years Peter align error message
(edit) @1916   13 years Peter activate message about gslcblas. refs #349
(edit) @1915   13 years Peter fixes #534
(edit) @1914   13 years Peter Using ACX_BLAS macro for blas detection. The behavior will likely be a …
(edit) @1897   13 years Peter fixes #522. Introduced a variable YAT_PRIMARY_LIBS that is YAT_LIBS …
(edit) @1896   13 years Peter prefer using macro when it exists
(edit) @1894   13 years Peter fixes #526. Moved gsl tests to its own file, 'm4/yat_gsl.m4'
(edit) @1892   13 years Peter Removed dependency to cblas in libyat. There are three new make …
(edit) @1842   13 years Peter adding a test for yat.m4
(edit) @1799   13 years Peter corrected handling of --disable-svn-support
(edit) @1797   13 years Peter updating copyright statements
(edit) @1795   13 years Jari Häkkinen Updated make request in the end of the configure.ac
(edit) @1785   13 years Peter Moving m4 files to directory m4/. NOTE: this change will break …
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