source: trunk/configure.ac

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Diff Rev Age Author Log Message
(edit) @3417   8 years Peter updating copyright statements
(edit) @3415   8 years Peter refs #794 Change logic in configure test looking for libhts/samtools …
(edit) @3413   8 years Peter Prefer variable name HAVE_SAMTOOLS_EXECUTABLE instead of HAVE_SAMTOOLS …
(edit) @3400   8 years Peter refs #794 Deprecate configure option --without-samtools and add new …
(edit) @3381   8 years Peter we require Autoconf 2.64; remove workaround for older Autoconf.
(edit) @3367   8 years Peter update to autoconf-archive-2015-02-04. Note that m4/ax_append_flag.m4 …
(edit) @3366   8 years Peter prefer private variables in yat.pc. closes #808
(edit) @3365   8 years Peter Use pc from zlib and htslib when linking against those packages. …
(edit) @3354   8 years Peter refs #794. fix configure test so it works with htslib.
(edit) @3350   8 years Peter Make configure htslib aware. Header detection changed to look for …
(edit) @3330   8 years Peter update copyright years
(edit) @3306   8 years Peter merge ptach release 0.12.1 into trunk
(edit) @3295   9 years Peter merge release 0.12 into trunk
(edit) @3250   9 years Peter remove gen_announce.sh.in since creation of announcement is now coded …
(edit) @3246   9 years Peter move some more targets from Makefile.am to macro YAT_SVN_RELEASE. Make …
(edit) @3231   9 years Peter tweak for clarity
(edit) @3214   9 years Peter fixes #789. Change behavious of configure so that if INTERNAL_CXXFLAGS …
(edit) @3201   9 years Peter add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
(edit) @3198   9 years Peter refs #790. Prefer checking (in configure) whether boost work rather …
(edit) @3188   9 years Peter merge patch release 0.11.2
(edit) @3111   9 years Peter refs #737 configure.ac: Define new variables YAT_LIBS, …
(edit) @3110   9 years Peter Fix test of YAT_LT_LINK_IFELSE. The macro/linking worked also against …
(edit) @3091   9 years Peter add test for libz and libbam. refs #737
(edit) @3088   9 years Peter avoid repetetive code and add tests for boost libs. refs #737
(edit) @3087   9 years Peter refs #737. check if -lgsl is suitable for libtool archive
(edit) @3086   9 years Peter add a new variable YAT_STATIC_LIBS; perform test if LIBM is suitable …
(edit) @3085   9 years Peter fix problem that YAT_CBLAS_LIB were not subtracted from …
(edit) @3072   9 years Peter prefer aborting directly when error is detected rather than in the …
(edit) @3045   10 years Peter fixes #762. workaround for broken boost header (in v1.41)
(edit) @3037   10 years Peter make shell tests work in VPATH build
(edit) @3036   10 years Peter common_defs does two things: 1) init test scripts 2) defines some …
(edit) @3035   10 years Peter allow test to require 'shared' in shell tests
(edit) @3018   10 years Peter merge patch release 0.10.2 into trunk
(edit) @2986   10 years Peter merge 0.10-stable branch into trunk
(edit) @2981   10 years Peter Skip yat_pc_test.sh when -without-samtools. fixes #748
(edit) @2960   10 years Peter merge patch release 0.10.1 into trunk
(edit) @2948   10 years Peter prefer AC_SEARCH_LIBS over AC_CHECK_LIB
(edit) @2945   10 years Peter avoid warning from Automake
(edit) @2943   10 years Peter merge release 0.10 into trunk
(edit) @2891   10 years Peter check for samtools in configure; create bam file in 'make check' if we …
(edit) @2882   10 years Peter add --enable-assert option (in configure)
(edit) @2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
(edit) @2878   10 years Peter typo
(edit) @2877   10 years Peter prepend LIBS to achieve recommended -lgsl -lcblas -lm
(edit) @2876   10 years Peter avoid word enable for something that is turned off with '--without'
(edit) @2875   10 years Peter delete leftover comments
(edit) @2873   10 years Peter prefer using YAT_MSG_ERROR and simplify computation of …
(edit) @2872   10 years Peter prefer YAT_MSG_ERROR. using it in inf test
(edit) @2871   10 years Peter prefer YAT_MSG_ERROR. using it in quiet_NAN test
(edit) @2869   10 years Peter improve error messages. emove debug code. refs #729
(edit) @2868   10 years Peter refs #729. Add configure tests for samtools
(edit) @2866   10 years Peter remove -Werror option for automake
(edit) @2838   10 years Peter merge release 0.9 into trunk
(edit) @2827   10 years Peter Remove -Itop_srcdir from CPPFLAGS. Automake already adds -Isrcdir to …
(edit) @2787   11 years Peter update coyright years
(edit) @2785   11 years Peter skip boost link tests if --without-boost was provided
(edit) @2782   11 years Jari Häkkinen Addresses #714. Added check for boost system libraries. Need to link …
(edit) @2781   11 years Peter fix spurious errors in long long test. First, remove -pthread before …
(edit) @2780   11 years Peter exclude -pthread from CPPFLAGS if compiler is warning about it. closes #713
(edit) @2774   11 years Peter report long long test
(edit) @2772   11 years Peter do not ignore BOOST_CPPFLAGS set in AX_BOOST_THREAD
(edit) @2769   11 years Peter refs #568. test using multithreaded RNG
(edit) @2767   11 years Peter look for boost thread library. refs #568
(edit) @2749   11 years Peter add small convenience Makefiles in subdirs. closes #703
(edit) @2739   11 years Peter refs #703 using a non-recursive Makefile. Old Makefile.am are kept but …
(edit) @2729   11 years Peter Define version on one line in order to avoid that version change in …
(edit) @2673   11 years Peter merge release 0.8 into trunk
(edit) @2628   11 years Peter avoid aclocal warning
(edit) @2627   11 years Peter lippstick for configure output. Avoid prefix 'configure:' and add some …
(edit) @2626   11 years Peter fixes #683
(edit) @2607   11 years Peter write-protect generated file to avoid editing
(edit) @2604   11 years Peter add helper script for release procedure.
(edit) @2601   11 years Peter merge release 0.7.3 into trunk. A couple of conflict and needed fix …
(edit) @2575   11 years Peter closes #654. support for silent-rules
(edit) @2517   12 years Peter use common_defs in documentation_test. Change name to doxygen_test to …
(edit) @2487   12 years Peter Change the semantics of htmldir and where htlm docs are installed. …
(edit) @2463   12 years Peter remove deprecated configure options: --with-gsl-prefix and …
(edit) @2455   12 years Peter closes #662
(edit) @2452   12 years Peter remove test/data/Makefile. distribute small.gff3
(edit) @2438   12 years Peter Move yathello test from maintainer-check to installcheck, which means …
(edit) @2431   12 years Peter fixes #620. Move version defines from 'version.h' to …
(edit) @2418   12 years Peter fixes #655. add a helper script, gen-yat-pc.sh, that generates yat.pc. …
(edit) @2354   12 years Peter Before we generate other docs in other formats than html. Remove …
(edit) @2341   12 years Peter New namespace omic and new class omic::DNA. closes #377
(edit) @2326   12 years Peter update boost m4 macro, which now uses …
(edit) @2309   12 years Peter create dummie doxygen.mk only if it doesnt exist
(edit) @2308   12 years Peter creating dummie doxygen.mk during configure. fixes #636
(edit) @2300   13 years Peter update BUG_REPORT
(edit) @2297   13 years Peter dvi, ps, and pdf docs are no longer supported
(edit) @2266   13 years Peter use 'echo' rather than the variable ECHO decided by libtool. The …
(edit) @2264   13 years Peter prefer hard-coding name yat because it increases readability and is …
(edit) @2244   13 years Peter fixes #619
(edit) @2241   13 years Peter remove AC_PROG_INSTALL which is already called by AM_INIT_AUTOMAKE and …
(edit) @2228   13 years Peter Using the parallel-tests driver. All tests are now by default verbose, …
(edit) @2227   13 years Peter automake 1.11 is now required. refs #475
(edit) @2224   13 years Peter Lift out rule generating doxygen.mk into one common place …
(edit) @2222   13 years Peter prefer yat (lower case)
(edit) @2161   13 years Peter updating copyright years
(edit) @2153   13 years Peter refs #603. Boost 1.35 is now required
(edit) @2131   13 years Peter prefer using AC_CONFIG_HEADERS rather than AC_CONFIG_HEADER
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