source: trunk/configure.ac

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Diff Rev Age Author Log Message
(edit) @3995   20 months Peter avoid using macros marked obsolete and instead use versions in LT_ …
(edit) @3966   22 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
(edit) @3960   22 months Peter closes #953. Since we are no longer using libboost_thread (or …
(edit) @3958   22 months Peter change to using std distributions instead of boost. Some distributions …
(edit) @3944   22 months Peter Since we require C++11 compiler (refs #949), no need to check if …
(edit) @3938   23 months Peter let configure fail if compiler is not a C++11 compiler. …
(edit) @3912   2 years Peter boost random classes beta_distribution, hyperexponential_distribution …
(edit) @3907   2 years Peter remove checks for nullptr before calling gsl free function and require …
(edit) @3900   2 years Peter closes #944; add configure check whether class is availabale in boost …
(edit) @3896   2 years Peter fixes #943, avoid compiler warning about deprecated boost header
(edit) @3883   2 years Peter remove support for building against libbam (which allows us to remove …
(edit) @3823   3 years Peter Merge release 0.16 into trunk
(edit) @3812   3 years Peter Ticket #922 describes a case where the linked in lib is not the same …
(edit) @3811   3 years Peter prefer variable assignment as autoconf time rather than at configure …
(edit) @3792   3 years Peter update copyright years
(edit) @3768   4 years Peter Capitalise consistently
(edit) @3761   4 years Peter refs #905. add configure check for boost library iostream
(edit) @3730   4 years Peter new function print_what() to print error message from std::nested_exception
(edit) @3716   5 years Peter Change rule in yat-config when /usr/local/include is output in …
(edit) @3715   5 years Peter Introduce variables 'YAT_CONFIG_CPPFLAGS', 'YAT_CONFIG_CXXFLAGS' and …
(edit) @3690   5 years Peter fixes #851
(edit) @3666   5 years Peter configure.ac: add --disable-cxx11 in --help output Change default …
(edit) @3641   5 years Peter Remove message about log2 support. If log2 is not available in std, …
(edit) @3640   5 years Peter use std::log2 when available
(edit) @3593   5 years Peter replace option --without-cxx11 with --enable-cxx11 and also change the …
(edit) @3591   5 years Peter fixes #877 Generalize YAT_CXX_RVALUE into YAT_CXX_TRY_CXX11 and use …
(edit) @3581   5 years Peter refs #878 Make configure try to turn on compiler switches (such as …
(edit) @3562   5 years Peter update copyright years
(edit) @3561   5 years Peter Merged release 0.13.1 into trunk
(edit) @3550   5 years Peter Update copyright years. Happy New Year
(edit) @3503   6 years Peter It's confusing to have variable name 'boost_version' as it's not …
(edit) @3497   6 years Peter move tests for htslib and samtools into file 'm4/yat_check_htslib.m4' …
(edit) @3496   6 years Peter only use samtools executable, if samtools 1.3 (or newer) is available
(edit) @3491   6 years Peter use consistently 'false' to indicate samtools is missing (not 'no')
(edit) @3485   6 years Peter linking against libbam is deprecated; it still works, but users are …
(edit) @3483   6 years Peter reject older samtools executable (0.1.19 and older)
(edit) @3439   7 years Peter merge release 0.13 into trunk
(edit) @3417   7 years Peter updating copyright statements
(edit) @3415   7 years Peter refs #794 Change logic in configure test looking for libhts/samtools …
(edit) @3413   7 years Peter Prefer variable name HAVE_SAMTOOLS_EXECUTABLE instead of HAVE_SAMTOOLS …
(edit) @3400   7 years Peter refs #794 Deprecate configure option --without-samtools and add new …
(edit) @3381   7 years Peter we require Autoconf 2.64; remove workaround for older Autoconf.
(edit) @3367   7 years Peter update to autoconf-archive-2015-02-04. Note that m4/ax_append_flag.m4 …
(edit) @3366   7 years Peter prefer private variables in yat.pc. closes #808
(edit) @3365   7 years Peter Use pc from zlib and htslib when linking against those packages. …
(edit) @3354   8 years Peter refs #794. fix configure test so it works with htslib.
(edit) @3350   8 years Peter Make configure htslib aware. Header detection changed to look for …
(edit) @3330   8 years Peter update copyright years
(edit) @3306   8 years Peter merge ptach release 0.12.1 into trunk
(edit) @3295   8 years Peter merge release 0.12 into trunk
(edit) @3250   8 years Peter remove gen_announce.sh.in since creation of announcement is now coded …
(edit) @3246   8 years Peter move some more targets from Makefile.am to macro YAT_SVN_RELEASE. Make …
(edit) @3231   8 years Peter tweak for clarity
(edit) @3214   8 years Peter fixes #789. Change behavious of configure so that if INTERNAL_CXXFLAGS …
(edit) @3201   8 years Peter add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
(edit) @3198   8 years Peter refs #790. Prefer checking (in configure) whether boost work rather …
(edit) @3188   8 years Peter merge patch release 0.11.2
(edit) @3111   9 years Peter refs #737 configure.ac: Define new variables YAT_LIBS, …
(edit) @3110   9 years Peter Fix test of YAT_LT_LINK_IFELSE. The macro/linking worked also against …
(edit) @3091   9 years Peter add test for libz and libbam. refs #737
(edit) @3088   9 years Peter avoid repetetive code and add tests for boost libs. refs #737
(edit) @3087   9 years Peter refs #737. check if -lgsl is suitable for libtool archive
(edit) @3086   9 years Peter add a new variable YAT_STATIC_LIBS; perform test if LIBM is suitable …
(edit) @3085   9 years Peter fix problem that YAT_CBLAS_LIB were not subtracted from …
(edit) @3072   9 years Peter prefer aborting directly when error is detected rather than in the …
(edit) @3045   9 years Peter fixes #762. workaround for broken boost header (in v1.41)
(edit) @3037   9 years Peter make shell tests work in VPATH build
(edit) @3036   9 years Peter common_defs does two things: 1) init test scripts 2) defines some …
(edit) @3035   9 years Peter allow test to require 'shared' in shell tests
(edit) @3018   9 years Peter merge patch release 0.10.2 into trunk
(edit) @2986   9 years Peter merge 0.10-stable branch into trunk
(edit) @2981   9 years Peter Skip yat_pc_test.sh when -without-samtools. fixes #748
(edit) @2960   9 years Peter merge patch release 0.10.1 into trunk
(edit) @2948   9 years Peter prefer AC_SEARCH_LIBS over AC_CHECK_LIB
(edit) @2945   9 years Peter avoid warning from Automake
(edit) @2943   9 years Peter merge release 0.10 into trunk
(edit) @2891   9 years Peter check for samtools in configure; create bam file in 'make check' if we …
(edit) @2882   10 years Peter add --enable-assert option (in configure)
(edit) @2881   10 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
(edit) @2878   10 years Peter typo
(edit) @2877   10 years Peter prepend LIBS to achieve recommended -lgsl -lcblas -lm
(edit) @2876   10 years Peter avoid word enable for something that is turned off with '--without'
(edit) @2875   10 years Peter delete leftover comments
(edit) @2873   10 years Peter prefer using YAT_MSG_ERROR and simplify computation of …
(edit) @2872   10 years Peter prefer YAT_MSG_ERROR. using it in inf test
(edit) @2871   10 years Peter prefer YAT_MSG_ERROR. using it in quiet_NAN test
(edit) @2869   10 years Peter improve error messages. emove debug code. refs #729
(edit) @2868   10 years Peter refs #729. Add configure tests for samtools
(edit) @2866   10 years Peter remove -Werror option for automake
(edit) @2838   10 years Peter merge release 0.9 into trunk
(edit) @2827   10 years Peter Remove -Itop_srcdir from CPPFLAGS. Automake already adds -Isrcdir to …
(edit) @2787   10 years Peter update coyright years
(edit) @2785   10 years Peter skip boost link tests if --without-boost was provided
(edit) @2782   10 years Jari Häkkinen Addresses #714. Added check for boost system libraries. Need to link …
(edit) @2781   10 years Peter fix spurious errors in long long test. First, remove -pthread before …
(edit) @2780   10 years Peter exclude -pthread from CPPFLAGS if compiler is warning about it. closes #713
(edit) @2774   10 years Peter report long long test
(edit) @2772   10 years Peter do not ignore BOOST_CPPFLAGS set in AX_BOOST_THREAD
(edit) @2769   10 years Peter refs #568. test using multithreaded RNG
(edit) @2767   10 years Peter look for boost thread library. refs #568
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