source: trunk/configure.ac

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Diff Rev Age Author Log Message
(edit) @3995   8 months Peter avoid using macros marked obsolete and instead use versions in LT_ …
(edit) @3966   9 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
(edit) @3960   10 months Peter closes #953. Since we are no longer using libboost_thread (or …
(edit) @3958   10 months Peter change to using std distributions instead of boost. Some distributions …
(edit) @3944   10 months Peter Since we require C++11 compiler (refs #949), no need to check if …
(edit) @3938   10 months Peter let configure fail if compiler is not a C++11 compiler. …
(edit) @3912   12 months Peter boost random classes beta_distribution, hyperexponential_distribution …
(edit) @3907   12 months Peter remove checks for nullptr before calling gsl free function and require …
(edit) @3900   13 months Peter closes #944; add configure check whether class is availabale in boost …
(edit) @3896   14 months Peter fixes #943, avoid compiler warning about deprecated boost header
(edit) @3883   14 months Peter remove support for building against libbam (which allows us to remove …
(edit) @3823   22 months Peter Merge release 0.16 into trunk
(edit) @3812   23 months Peter Ticket #922 describes a case where the linked in lib is not the same …
(edit) @3811   23 months Peter prefer variable assignment as autoconf time rather than at configure …
(edit) @3792   2 years Peter update copyright years
(edit) @3768   3 years Peter Capitalise consistently
(edit) @3761   3 years Peter refs #905. add configure check for boost library iostream
(edit) @3730   3 years Peter new function print_what() to print error message from std::nested_exception
(edit) @3716   4 years Peter Change rule in yat-config when /usr/local/include is output in …
(edit) @3715   4 years Peter Introduce variables 'YAT_CONFIG_CPPFLAGS', 'YAT_CONFIG_CXXFLAGS' and …
(edit) @3690   4 years Peter fixes #851
(edit) @3666   4 years Peter configure.ac: add --disable-cxx11 in --help output Change default …
(edit) @3641   4 years Peter Remove message about log2 support. If log2 is not available in std, …
(edit) @3640   4 years Peter use std::log2 when available
(edit) @3593   4 years Peter replace option --without-cxx11 with --enable-cxx11 and also change the …
(edit) @3591   4 years Peter fixes #877 Generalize YAT_CXX_RVALUE into YAT_CXX_TRY_CXX11 and use …
(edit) @3581   4 years Peter refs #878 Make configure try to turn on compiler switches (such as …
(edit) @3562   4 years Peter update copyright years
(edit) @3561   4 years Peter Merged release 0.13.1 into trunk
(edit) @3550   4 years Peter Update copyright years. Happy New Year
(edit) @3503   5 years Peter It's confusing to have variable name 'boost_version' as it's not …
(edit) @3497   5 years Peter move tests for htslib and samtools into file 'm4/yat_check_htslib.m4' …
(edit) @3496   5 years Peter only use samtools executable, if samtools 1.3 (or newer) is available
(edit) @3491   5 years Peter use consistently 'false' to indicate samtools is missing (not 'no')
(edit) @3485   5 years Peter linking against libbam is deprecated; it still works, but users are …
(edit) @3483   5 years Peter reject older samtools executable (0.1.19 and older)
(edit) @3439   5 years Peter merge release 0.13 into trunk
(edit) @3417   6 years Peter updating copyright statements
(edit) @3415   6 years Peter refs #794 Change logic in configure test looking for libhts/samtools …
(edit) @3413   6 years Peter Prefer variable name HAVE_SAMTOOLS_EXECUTABLE instead of HAVE_SAMTOOLS …
(edit) @3400   6 years Peter refs #794 Deprecate configure option --without-samtools and add new …
(edit) @3381   6 years Peter we require Autoconf 2.64; remove workaround for older Autoconf.
(edit) @3367   6 years Peter update to autoconf-archive-2015-02-04. Note that m4/ax_append_flag.m4 …
(edit) @3366   6 years Peter prefer private variables in yat.pc. closes #808
(edit) @3365   6 years Peter Use pc from zlib and htslib when linking against those packages. …
(edit) @3354   6 years Peter refs #794. fix configure test so it works with htslib.
(edit) @3350   6 years Peter Make configure htslib aware. Header detection changed to look for …
(edit) @3330   7 years Peter update copyright years
(edit) @3306   7 years Peter merge ptach release 0.12.1 into trunk
(edit) @3295   7 years Peter merge release 0.12 into trunk
(edit) @3250   7 years Peter remove gen_announce.sh.in since creation of announcement is now coded …
(edit) @3246   7 years Peter move some more targets from Makefile.am to macro YAT_SVN_RELEASE. Make …
(edit) @3231   7 years Peter tweak for clarity
(edit) @3214   7 years Peter fixes #789. Change behavious of configure so that if INTERNAL_CXXFLAGS …
(edit) @3201   7 years Peter add #define YAT_HAVE_LIBBAM to API and replace HAVE_LIBBAM accordingly.
(edit) @3198   7 years Peter refs #790. Prefer checking (in configure) whether boost work rather …
(edit) @3188   7 years Peter merge patch release 0.11.2
(edit) @3111   8 years Peter refs #737 configure.ac: Define new variables YAT_LIBS, …
(edit) @3110   8 years Peter Fix test of YAT_LT_LINK_IFELSE. The macro/linking worked also against …
(edit) @3091   8 years Peter add test for libz and libbam. refs #737
(edit) @3088   8 years Peter avoid repetetive code and add tests for boost libs. refs #737
(edit) @3087   8 years Peter refs #737. check if -lgsl is suitable for libtool archive
(edit) @3086   8 years Peter add a new variable YAT_STATIC_LIBS; perform test if LIBM is suitable …
(edit) @3085   8 years Peter fix problem that YAT_CBLAS_LIB were not subtracted from …
(edit) @3072   8 years Peter prefer aborting directly when error is detected rather than in the …
(edit) @3045   8 years Peter fixes #762. workaround for broken boost header (in v1.41)
(edit) @3037   8 years Peter make shell tests work in VPATH build
(edit) @3036   8 years Peter common_defs does two things: 1) init test scripts 2) defines some …
(edit) @3035   8 years Peter allow test to require 'shared' in shell tests
(edit) @3018   8 years Peter merge patch release 0.10.2 into trunk
(edit) @2986   8 years Peter merge 0.10-stable branch into trunk
(edit) @2981   8 years Peter Skip yat_pc_test.sh when -without-samtools. fixes #748
(edit) @2960   8 years Peter merge patch release 0.10.1 into trunk
(edit) @2948   8 years Peter prefer AC_SEARCH_LIBS over AC_CHECK_LIB
(edit) @2945   8 years Peter avoid warning from Automake
(edit) @2943   8 years Peter merge release 0.10 into trunk
(edit) @2891   8 years Peter check for samtools in configure; create bam file in 'make check' if we …
(edit) @2882   8 years Peter add --enable-assert option (in configure)
(edit) @2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
(edit) @2878   8 years Peter typo
(edit) @2877   8 years Peter prepend LIBS to achieve recommended -lgsl -lcblas -lm
(edit) @2876   9 years Peter avoid word enable for something that is turned off with '--without'
(edit) @2875   9 years Peter delete leftover comments
(edit) @2873   9 years Peter prefer using YAT_MSG_ERROR and simplify computation of …
(edit) @2872   9 years Peter prefer YAT_MSG_ERROR. using it in inf test
(edit) @2871   9 years Peter prefer YAT_MSG_ERROR. using it in quiet_NAN test
(edit) @2869   9 years Peter improve error messages. emove debug code. refs #729
(edit) @2868   9 years Peter refs #729. Add configure tests for samtools
(edit) @2866   9 years Peter remove -Werror option for automake
(edit) @2838   9 years Peter merge release 0.9 into trunk
(edit) @2827   9 years Peter Remove -Itop_srcdir from CPPFLAGS. Automake already adds -Isrcdir to …
(edit) @2787   9 years Peter update coyright years
(edit) @2785   9 years Peter skip boost link tests if --without-boost was provided
(edit) @2782   9 years Jari Häkkinen Addresses #714. Added check for boost system libraries. Need to link …
(edit) @2781   9 years Peter fix spurious errors in long long test. First, remove -pthread before …
(edit) @2780   9 years Peter exclude -pthread from CPPFLAGS if compiler is warning about it. closes #713
(edit) @2774   9 years Peter report long long test
(edit) @2772   9 years Peter do not ignore BOOST_CPPFLAGS set in AX_BOOST_THREAD
(edit) @2769   9 years Peter refs #568. test using multithreaded RNG
(edit) @2767   9 years Peter look for boost thread library. refs #568
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