

@560

16 years 
Markus Ringnér 
Minor fixes plus fixed bug in ConsensusInputRanker?



@559

16 years 
Peter 
some changes in EB



@558

16 years 
Peter 
ConsensusInputRanker? now supports weights



@557

16 years 
Peter 
fixed bug in Averager::variance



@556

16 years 
Peter 
correcting assignment operators



@555

16 years 
Peter 
inserted private operator=



@553

16 years 
Peter 
added range check in KernelLookup? Constructor and clarified doc in …



@552

16 years 
Peter 
killed bug in SVM



@550

16 years 
Peter 
removed assert from matrix.h



@549

16 years 
Peter 
forgot to add file



@548

16 years 
Peter 
fixed bug in Kernels



@547

16 years 
Peter 
deleting dynamically allocated kernels in SVM destructor



@546

16 years 
Peter 
inlined function



@545

16 years 
Peter 
added feature selection for SVM



@544

16 years 
Peter 
corrected SVM::make_classifier



@543

16 years 
Peter 
moved destruction of ranker to SupervisedClassifier?



@542

16 years 
Peter 
added predict function in SVM supporting weight



@541

16 years 
Peter 
weights supported in CrossSplitter?



@540

16 years 
Peter 
added weights in CrossSplitter?  not supported in interface though.



@539

16 years 
Peter 
reintroduced prediction in SVM



@537

16 years 
Peter 
forked tests and fixed bugs



@536

16 years 
Peter 
fixed problem with ConsensusInputranker?  Now all tests do pass



@535

16 years 
Peter 
changed minor stupid stuff in gslapi



@534

16 years 
Peter 
bug fixes in MatrixLookup? and extended test



@533

16 years 
Peter 
test for MatrixLookup?. NOTE: consensus_inputranker_test still fails



@532

16 years 
Peter 
modified implementation of Parson weighted  now in line with other …



@531

16 years 
Markus Ringnér 
Note there are some problem when creating MatrixLookups? from …



@530

16 years 
Markus Ringnér 
Fixed problems for empty target groups



@529

16 years 
Markus Ringnér 
Added score for signaltonoise ratio (Golub score). Fixed …



@528

16 years 
Peter 
adding source files that were forgotten



@527

16 years 
Peter 
Modified Kernel to be built from MatrixLookup? rather than …



@526

16 years 
Markus Ringnér 
Fixed bug in tScore and in MatrixLookup?. Added support for scoring …



@525

16 years 
Markus Ringnér 
Added structure to Supervised classifier and NCC to support ranking …



@524

16 years 
Peter 
fixed bug PolynimialKernelFunction?  can now handle NaNs? with weights



@523

16 years 
Peter 
add prediction functions to SVM



@522

16 years 
Peter 
added function to add InputRanker? to ConsensusInputRanker?



@520

16 years 
Peter 
changed internal representation in Target



@519

16 years 
Peter 
percentile is now called percentile



@517

16 years 
Peter 
fixed bug in DataLookup2D and created test for EnsembleBuilder?



@516

16 years 
Peter 
added function generating weight matrix with respect to notanumber …



@515

16 years 
Peter 
fixed indentation for doxygen



@514

16 years 
Peter 
generalised binary functionality in Target



@513

16 years 
Peter 
added kernels using weights



@512

16 years 
Peter 
moved common member variables to base class Kernel



@511

16 years 
Peter 
added percentile function for gslapi::vector



@510

16 years 
Peter 
fixed nan return in AveragerPair::ccc()



@509

16 years 
Peter 
added test for target
redesign crossSplitter
added two class function …



@507

16 years 
Jari Häkkinen 
Reverting these files to revision 505; these were changed by mistake.



@506

16 years 
Jari Häkkinen 
Fixed spelling error.



@505

16 years 
Markus Ringnér 
Continuing with adding validation functionality to EnsembleBuilder?. …



@503

16 years 
Markus Ringnér 
First drafts for a distance interface and one implementation (Pearson)



@502

16 years 
Peter 
improved median and percentile functions



@501

16 years 
Jari Häkkinen 
Added missing #insert <cassert>



@500

16 years 
Peter 
implemented median function for gslapi::vector
changed sister …



@498

16 years 
Jari Häkkinen 
Fixed type mismatch on Mac.



@497

16 years 
Jari Häkkinen 
Added todo item.



@496

16 years 
Peter 
implemented AveragerPair::msd()



@495

16 years 
Peter 
modified interface for Regression::Local



@494

16 years 
Peter 
added pdf link and creation of Statistics document



@493

16 years 
Peter 
fixed typo in tScore and added make_classifier in SVM



@492

16 years 
Peter 
updated Weighted Statistics document and reimplemented few stuff. …



@491

16 years 
Peter 
made SVM inherit from SupervisedClassifer?



@490

16 years 
Peter 
added tests for AveragerPairWeighted?, corrected docs, and added an …



@489

16 years 
Peter 
added functions to AveragerPairWeighted?. Not tested yet.



@488

16 years 
Peter 
made Score classes ignoring data points with weight zero



@487

16 years 
Peter 
mad covariance calculation coherent with variance and added tests for …



@486

16 years 
Peter 
aligned AveragerWeighted? with Averager and added tests for checking …



@485

16 years 
Markus Ringnér 
First draft of EnsembleBuilder?



@484

16 years 
Peter 
added tests to Averager and fixed bug



@483

16 years 
Peter 
Went through averager class. Changed function to be sum_xx and …



@482

16 years 
Peter 
modified interface to CrossSplitter?, added functions to DataLookup2D …



@481

16 years 
Markus Ringnér 
Initial versions that will not compile but are more documentation for …



@478

16 years 
Peter 
removed KernelView? again  somehow the file was resurrected when the …



@476

16 years 
Markus Ringnér 
Added interface class for supervised classifiers. Fixed NCC to comply …



@475

16 years 
Peter 
I dont know what happened, but everything is changed…



@465

16 years 
Peter 
implemented score for WilcoxonFoldChange?



@464

16 years 
Peter 
made median template



@463

16 years 
Peter 
fixed bug in KernelView? constructor and updated tests



@461

16 years 
Peter 
?



@460

16 years 
Peter 
changed name of class



@459

16 years 
Peter 
only one class per line in Makefile.am



@457

16 years 
Markus Ringnér 



@456

16 years 
Markus Ringnér 
Updated to use DataViews?



@455

16 years 
Markus Ringnér 
Adding classes to support general views of matrices (and kernels). …



@454

16 years 
Markus Ringnér 
Added class for Nearest Centroid Classifier



@452

16 years 
Peter 
it should compile now



@451

16 years 
Peter 
directory svm > classifier



@450

16 years 
Peter 
starting to move namespace svm, it wont work compiling for a while, …



@449

16 years 
Peter 
added approximative pvalue calculation using Chi2, fixed some bugs, …



@448

16 years 
Peter 
oops, at least compiling now



@447

16 years 
Peter 
added copy constructor for KernelView? and added construction of …



@446

16 years 
Peter 
added copy constructor for KernelView? and added construction of …



@445

16 years 
Peter 
added reset function and copy constructor to SVM



@444

16 years 
Markus Ringnér 
cosmetic change of printout



@443

16 years 
Jari Häkkinen 
Added missing virtual destructors.



@441

16 years 
Jari Häkkinen 
Added include of cassert



@440

16 years 
Jari Häkkinen 
Added include of cassert



@439

16 years 
Markus Ringnér 
Fixed istream parsing when separator is last on line: a trailing NaN …



@437

16 years 
Jari Häkkinen 
Minor style fixes.



@436

16 years 
Markus Ringnér 
Added support for NaN:s in read_to_int and read_to_double. Added …


