source: trunk/lib

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Diff Rev Age Author Log Message
(edit) @562   16 years Jari Häkkinen Corrected copyright statement.
(edit) @561   16 years Jari Häkkinen Fixed documentation, added copyright statement.
(edit) @560   16 years Markus Ringnér Minor fixes plus fixed bug in ConsensusInputRanker?
(edit) @559   16 years Peter some changes in EB
(edit) @558   16 years Peter ConsensusInputRanker? now supports weights
(edit) @557   16 years Peter fixed bug in Averager::variance
(edit) @556   16 years Peter correcting assignment operators
(edit) @555   16 years Peter inserted private operator=
(edit) @553   16 years Peter added range check in KernelLookup? Constructor and clarified doc in …
(edit) @552   16 years Peter killed bug in SVM
(edit) @550   16 years Peter removed assert from matrix.h
(edit) @549   16 years Peter forgot to add file
(edit) @548   16 years Peter fixed bug in Kernels
(edit) @547   16 years Peter deleting dynamically allocated kernels in SVM destructor
(edit) @546   16 years Peter inlined function
(edit) @545   16 years Peter added feature selection for SVM
(edit) @544   16 years Peter corrected SVM::make_classifier
(edit) @543   16 years Peter moved destruction of ranker to SupervisedClassifier?
(edit) @542   16 years Peter added predict function in SVM supporting weight
(edit) @541   16 years Peter weights supported in CrossSplitter?
(edit) @540   16 years Peter added weights in CrossSplitter? - not supported in interface though.
(edit) @539   16 years Peter re-introduced prediction in SVM
(edit) @537   16 years Peter forked tests and fixed bugs
(edit) @536   16 years Peter fixed problem with ConsensusInputranker? - Now all tests do pass
(edit) @535   16 years Peter changed minor stupid stuff in gslapi
(edit) @534   16 years Peter bug fixes in MatrixLookup? and extended test
(edit) @533   16 years Peter test for MatrixLookup?. NOTE: consensus_inputranker_test still fails
(edit) @532   16 years Peter modified implementation of Parson weighted - now in line with other …
(edit) @531   16 years Markus Ringnér Note there are some problem when creating MatrixLookups? from …
(edit) @530   16 years Markus Ringnér Fixed problems for empty target groups
(edit) @529   16 years Markus Ringnér Added score for signal-to-noise ratio (Golub score). Fixed …
(edit) @528   16 years Peter adding source files that were forgotten
(edit) @527   16 years Peter Modified Kernel to be built from MatrixLookup? rather than …
(edit) @526   16 years Markus Ringnér Fixed bug in tScore and in MatrixLookup?. Added support for scoring …
(edit) @525   16 years Markus Ringnér Added structure to Supervised classifier and NCC to support ranking …
(edit) @524   16 years Peter fixed bug PolynimialKernelFunction? - can now handle NaNs? with weights
(edit) @523   16 years Peter add prediction functions to SVM
(edit) @522   16 years Peter added function to add InputRanker? to ConsensusInputRanker?
(edit) @520   16 years Peter changed internal representation in Target
(edit) @519   16 years Peter percentile is now called percentile
(edit) @517   16 years Peter fixed bug in DataLookup2D and created test for EnsembleBuilder?
(edit) @516   16 years Peter added function generating weight matrix with respect to not-a-number …
(edit) @515   16 years Peter fixed indentation for doxygen
(edit) @514   16 years Peter generalised binary functionality in Target
(edit) @513   16 years Peter added kernels using weights
(edit) @512   16 years Peter moved common member variables to base class Kernel
(edit) @511   16 years Peter added percentile function for gslapi::vector
(edit) @510   16 years Peter fixed nan return in AveragerPair::ccc()
(edit) @509   16 years Peter added test for target redesign crossSplitter added two class function …
(edit) @507   17 years Jari Häkkinen Reverting these files to revision 505; these were changed by mistake.
(edit) @506   17 years Jari Häkkinen Fixed spelling error.
(edit) @505   17 years Markus Ringnér Continuing with adding validation functionality to EnsembleBuilder?. …
(edit) @503   17 years Markus Ringnér First drafts for a distance interface and one implementation (Pearson)
(edit) @502   17 years Peter improved median and percentile functions
(edit) @501   17 years Jari Häkkinen Added missing #insert <cassert>
(edit) @500   17 years Peter implemented median function for gslapi::vector changed sister …
(edit) @498   17 years Jari Häkkinen Fixed type mismatch on Mac.
(edit) @497   17 years Jari Häkkinen Added todo item.
(edit) @496   17 years Peter implemented AveragerPair::msd()
(edit) @495   17 years Peter modified interface for Regression::Local
(edit) @494   17 years Peter added pdf link and creation of Statistics document
(edit) @493   17 years Peter fixed typo in tScore and added make_classifier in SVM
(edit) @492   17 years Peter updated Weighted Statistics document and reimplemented few stuff. …
(edit) @491   17 years Peter made SVM inherit from SupervisedClassifer?
(edit) @490   17 years Peter added tests for AveragerPairWeighted?, corrected docs, and added an …
(edit) @489   17 years Peter added functions to AveragerPairWeighted?. Not tested yet.
(edit) @488   17 years Peter made Score classes ignoring data points with weight zero
(edit) @487   17 years Peter mad covariance calculation coherent with variance and added tests for …
(edit) @486   17 years Peter aligned AveragerWeighted? with Averager and added tests for checking …
(edit) @485   17 years Markus Ringnér First draft of EnsembleBuilder?
(edit) @484   17 years Peter added tests to Averager and fixed bug
(edit) @483   17 years Peter Went through averager class. Changed function to be sum_xx and …
(edit) @482   17 years Peter modified interface to CrossSplitter?, added functions to DataLookup2D …
(edit) @481   17 years Markus Ringnér Initial versions that will not compile but are more documentation for …
(edit) @478   17 years Peter removed KernelView? again - somehow the file was resurrected when the …
(edit) @476   17 years Markus Ringnér Added interface class for supervised classifiers. Fixed NCC to comply …
(edit) @475   17 years Peter I dont know what happened, but everything is changed…
(edit) @465   17 years Peter implemented score for WilcoxonFoldChange?
(edit) @464   17 years Peter made median template
(edit) @463   17 years Peter fixed bug in KernelView? constructor and updated tests
(edit) @461   17 years Peter ?
(edit) @460   17 years Peter changed name of class
(edit) @459   17 years Peter only one class per line in Makefile.am
(edit) @457   17 years Markus Ringnér
(edit) @456   17 years Markus Ringnér Updated to use DataViews?
(edit) @455   17 years Markus Ringnér Adding classes to support general views of matrices (and kernels). …
(edit) @454   17 years Markus Ringnér Added class for Nearest Centroid Classifier
(edit) @452   17 years Peter it should compile now
(edit) @451   17 years Peter directory svm -> classifier
(edit) @450   17 years Peter starting to move namespace svm, it wont work compiling for a while, …
(edit) @449   17 years Peter added approximative p-value calculation using Chi2, fixed some bugs, …
(edit) @448   17 years Peter oops, at least compiling now
(edit) @447   17 years Peter added copy constructor for KernelView? and added construction of …
(edit) @446   17 years Peter added copy constructor for KernelView? and added construction of …
(edit) @445   17 years Peter added reset function and copy constructor to SVM
(edit) @444   17 years Markus Ringnér cosmetic change of printout
(edit) @443   17 years Jari Häkkinen Added missing virtual destructors.
(edit) @441   17 years Jari Häkkinen Added include of cassert
(edit) @440   17 years Jari Häkkinen Added include of cassert
(edit) @439   17 years Markus Ringnér Fixed istream parsing when separator is last on line: a trailing NaN …
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