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@4042
|
15 months |
Peter |
upgrade to autoconf-archive-2021.02.19
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@4032
|
16 months |
Peter |
merge release 0.18.1 into trunk
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@4019
|
19 months |
Peter |
merge 0.18 into trunk
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@4003
|
20 months |
Peter |
Add a constructor Aligner::Cigar(string) (closes #962)
Add a function …
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@4001
|
20 months |
Peter |
Bumping version to 0.19pre
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@3999
|
20 months |
Peter |
update copyright years
|
|
|
@3987
|
21 months |
Peter |
merge release 0.17.2 into trunk
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|
@3966
|
22 months |
Peter |
merge changes in 0.17-stable branch (since 0.17.1) into trunk.
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@3960
|
22 months |
Peter |
closes #953. Since we are no longer using libboost_thread (or …
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@3937
|
23 months |
Peter |
refs #949. New macro YAT_CXX11 that tests if compiler is CXX compliant …
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@3930
|
23 months |
Peter |
merge release 0.17.1 into trunk
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@3890
|
2 years |
Peter |
Both HAVE_HTSLIB and have_htslib we AC_SUBST'd with different output, …
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@3886
|
2 years |
Peter |
add missing macros in intstall target; sort files alphabetically
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@3885
|
2 years |
Peter |
Lift out macro YAT_CHECK_HEADERS to its own file, yat_check_header.m4. …
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@3884
|
2 years |
Peter |
fix docs typo
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@3883
|
2 years |
Peter |
remove support for building against libbam (which allows us to remove …
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@3882
|
2 years |
Peter |
correct docs
|
|
|
@3875
|
2 years |
Peter |
merge release 0.17 into trunk
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|
@3870
|
2 years |
Peter |
merge changes from 0.17-stable branch
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|
|
@3867
|
2 years |
Peter |
allow user to override values from pkg-config
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@3866
|
2 years |
Peter |
new macro to detect plplot library and header files (heavily inspired …
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@3865
|
2 years |
Peter |
new macro YAT_CHECK_LIBS
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|
@3857
|
2 years |
Peter |
bumping VERSION to 0.18pre
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|
@3855
|
2 years |
Peter |
updating copyright statements
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|
|
@3851
|
2 years |
Peter |
merge release 0.16.3 into trunk.
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@3840
|
3 years |
Peter |
merge release yat-0.16.2 into trunk
|
|
|
@3832
|
3 years |
Peter |
merge release 0.16.1 intro trunk
|
|
|
@3821
|
3 years |
Peter |
improve docs
|
|
|
@3796
|
3 years |
Peter |
bump version to 0.17pre
|
|
|
@3794
|
3 years |
Peter |
update copyright year
|
|
|
@3793
|
3 years |
Peter |
prepare 0.16-stable branch
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|
|
@3792
|
3 years |
Peter |
update copyright years
|
|
|
@3791
|
3 years |
Peter |
add missing properties
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|
|
@3786
|
3 years |
Peter |
The code snippet in YAT_CXX_THROW_IF_NESTED didn't compile also when …
|
|
|
@3785
|
3 years |
Peter |
adjust for changes introduced in autoconf-archive-2019.01.06
|
|
|
@3783
|
3 years |
Peter |
upgrade to autoconf-archive-2019.01.06 also files not used in …
|
|
|
@3782
|
3 years |
Peter |
upgrade to autoconf-archive-2019.01.06
|
|
|
@3763
|
4 years |
Peter |
refs #905
Some naive tests for class VcfFile?. Also add a test VCF …
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|
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@3761
|
4 years |
Peter |
refs #905. add configure check for boost library iostream
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|
|
@3743
|
4 years |
Peter |
merge release 0.15.1 into trunk
|
|
|
@3730
|
4 years |
Peter |
new function print_what() to print error message from std::nested_exception
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|
|
@3728
|
4 years |
Peter |
New macro YAT_SEARCH_LIBS, similar to AC_SEARCH_LIBS but does not …
|
|
|
@3720
|
5 years |
Peter |
update to autoconf-archive 2017.09.28
|
|
|
@3713
|
5 years |
Peter |
merge release 0.15 into trunk
|
|
|
@3707
|
5 years |
Peter |
bumping version to 0.16pre
|
|
|
@3698
|
5 years |
Peter |
merge release 0.14.4 into trunk
|
|
|
@3671
|
5 years |
Peter |
change svncopyright config to warn about missing copyright; add ignore …
|
|
|
@3666
|
5 years |
Peter |
configure.ac: add --disable-cxx11 in --help output
Change default …
|
|
|
@3661
|
5 years |
Peter |
update copyright years
|
|
|
@3640
|
5 years |
Peter |
use std::log2 when available
|
|
|
@3636
|
5 years |
Peter |
merge 0.14.3 into trunk
|
|
|
@3628
|
5 years |
Peter |
merge release 0.14.2 into trunk
|
|
|
@3623
|
5 years |
Peter |
merge release 0.14.1 into trunk
move functions 'create_gsl_vector' …
|
|
|
@3591
|
5 years |
Peter |
fixes #877
Generalize YAT_CXX_RVALUE into YAT_CXX_TRY_CXX11 and use …
|
|
|
@3590
|
5 years |
Peter |
change file name to more generic 'yat_cxx11.m4' (laying out the carpet …
|
|
|
@3588
|
5 years |
Peter |
refs #878
Modify macro YAT_CHECK_HEADER so it adds …
|
|
|
@3586
|
5 years |
Peter |
restore CXX to avoid multiple opt ammended
|
|
|
@3581
|
5 years |
Peter |
refs #878
Make configure try to turn on compiler switches (such as …
|
|
|
@3566
|
5 years |
Peter |
bumping version to 0.15pre
|
|
|
@3564
|
5 years |
Peter |
Prepare 0.14-stable branch
|
|
|
@3561
|
5 years |
Peter |
Merged release 0.13.1 into trunk
|
|
|
@3497
|
6 years |
Peter |
move tests for htslib and samtools into file 'm4/yat_check_htslib.m4' …
|
|
|
@3453
|
6 years |
Peter |
closes #839
Simplify code by looping over different cblas …
|
|
|
@3452
|
6 years |
Peter |
fix typo, leftover from mother code
|
|
|
@3424
|
7 years |
Peter |
upgrade to autoconf-archive-2015.09.25
|
|
|
@3419
|
7 years |
Peter |
bumping version to 0.14pre
|
|
|
@3417
|
7 years |
Peter |
updating copyright statements
|
|
|
@3416
|
7 years |
Peter |
prepare 0.13-stable branch
|
|
|
@3415
|
7 years |
Peter |
refs #794
Change logic in configure test looking for libhts/samtools …
|
|
|
@3378
|
7 years |
Peter |
Use latest version from git repo (patch was approved by archive managers)
|
|
|
@3367
|
7 years |
Peter |
update to autoconf-archive-2015-02-04. Note that m4/ax_append_flag.m4 …
|
|
|
@3366
|
7 years |
Peter |
prefer private variables in yat.pc. closes #808
|
|
|
@3350
|
8 years |
Peter |
Make configure htslib aware. Header detection changed to look for …
|
|
|
@3342
|
8 years |
Peter |
merge 0.12.2 into trunk
|
|
|
@3331
|
8 years |
Peter |
update to autoconf-archive 2014.10.15
|
|
|
@3330
|
8 years |
Peter |
update copyright years
|
|
|
@3313
|
8 years |
Peter |
Correct syntax so it works in VPATH build. Correct yat-hello source so …
|
|
|
@3311
|
8 years |
Peter |
append EXTRA_DIST with some m4 files that were missing in dist (only …
|
|
|
@3308
|
8 years |
Peter |
fixed two more glitches in the new version of 'make …
|
|
|
@3306
|
8 years |
Peter |
merge ptach release 0.12.1 into trunk
|
|
|
@3299
|
8 years |
Peter |
fix some glitches in make release-tag-upload rule (found while …
|
|
|
@3270
|
8 years |
Peter |
When a project has a files that depends on the svn revsion such as …
|
|
|
@3269
|
8 years |
Peter |
fix some issues in YAT_SVN_RELEASE
|
|
|
@3268
|
8 years |
Peter |
fix that check-svn-diff exit 1 on success.
|
|
|
@3267
|
8 years |
Peter |
fix broken make rule 'check-svn-diff'; regressed in r3246
|
|
|
@3256
|
8 years |
Peter |
prefix DEV_BUILD with YAT_ (or uppercase(PACKAGE_) in general case, so …
|
|
|
@3246
|
8 years |
Peter |
move some more targets from Makefile.am to macro YAT_SVN_RELEASE. Make …
|
|
|
@3230
|
8 years |
Peter |
typo
|
|
|
@3229
|
8 years |
Peter |
translate variables when PACKAGE is not suitable as shell variable or …
|
|
|
@3226
|
8 years |
Peter |
New macro YAT_HEADER_ASSERT
|
|
|
@3220
|
8 years |
Peter |
bump version to 0.13pre
|
|
|
@3215
|
8 years |
Peter |
Prepare 0.12-stable branch
|
|
|
@3188
|
8 years |
Peter |
merge patch release 0.11.2
|
|
|
@3171
|
8 years |
Peter |
updated to autoconf-archive-2014.02.28
|
|
|
@3144
|
8 years |
Peter |
merge patch release 0.11.1 into trunk
|
|
|
@3130
|
9 years |
Peter |
merge release 0.11 into trunk
|
|
|
@3117
|
9 years |
Peter |
Bump version to 0.12pre
|
|
|
@3114
|
9 years |
Peter |
update copyright years
|
|
|
@3113
|
9 years |
Peter |
change YAT_USE_LIBTOOL_[PUSH|POP] so it only affects the linking tests …
|
|
|
@3105
|
9 years |
Peter |
upgrade to autoconf-archive-2013-11-01
|
|
|