source: trunk/test/Makefile.am

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Diff Rev Age Author Log Message
(edit) @3109   8 years Peter correct dependency
(edit) @3099   8 years Peter make rule for bams silent when in silent mode
(edit) @3070   8 years Peter improve docs and clean up output files. closes #759
(edit) @3069   8 years Peter New macro YAT_LT_LINK_LA_IFELSE that tests if we can use code and LIBS …
(edit) @3063   8 years Peter add another test for new class Queue
(edit) @3057   8 years Peter New class: multithread safe queue
(edit) @3053   8 years Peter refs #757. new macro linking against bam stuff in libyat
(edit) @3042   8 years Peter make rules for samtools more silent-rules friendly
(edit) @3041   8 years Peter fix distcheck issues
(edit) @3040   8 years Peter create build rule for test shared lib. closes #761
(edit) @3038   8 years Peter refs #761. added make rule to create static library
(edit) @3037   8 years Peter make shell tests work in VPATH build
(edit) @3036   8 years Peter common_defs does two things: 1) init test scripts 2) defines some …
(edit) @3034   8 years Peter fix bug that libtool tags were not expanded correctly
(edit) @3018   8 years Peter merge patch release 0.10.2 into trunk
(edit) @2995   8 years Peter closes #741. New class MergeIterator?
(edit) @2994   8 years Peter new class BamReadFilter?. closes #738
(edit) @2986   8 years Peter merge 0.10-stable branch into trunk
(edit) @2982   8 years Peter fix typo introduced in r2980
(edit) @2980   8 years Peter add syntax-check rule (included in maintainer-check), add two missing …
(edit) @2960   9 years Peter merge patch release 0.10.1 into trunk
(edit) @2951   9 years Peter add deps for lazycheck
(edit) @2950   9 years Peter test for yat.pc. closes #734
(edit) @2946   9 years Peter avoid duplication
(edit) @2943   9 years Peter merge release 0.10 into trunk
(edit) @2932   9 years Peter remove misleading comment as these files are no longer direct input to …
(edit) @2902   9 years Peter test for bam_pair_analyse. refs #729
(edit) @2895   9 years Peter add two tests for bam functionality
(edit) @2894   9 years Peter fix VPATH build issues
(edit) @2893   9 years Peter run (also C++) tests in specific test dir so test can create temporary …
(edit) @2891   9 years Peter check for samtools in configure; create bam file in 'make check' if we …
(edit) @2888   9 years Peter add example SAM file. refs #729
(edit) @2858   9 years Peter closes #725
(edit) @2853   9 years Peter merge patch release 0.9.1 into trunk
(edit) @2809   9 years Peter closes #705. Create a common interface class for average classes …
(edit) @2799   9 years Peter first version of class Averager4. refs #705
(edit) @2769   9 years Peter refs #568. test using multithreaded RNG
(edit) @2762   9 years Peter set dependency for doxygen_test.sh
(edit) @2744   9 years Peter conform rules make rules for yat-hello.1.0.tar.gz, yat-config and …
(edit) @2739   9 years Peter refs #703 using a non-recursive Makefile. Old Makefile.am are kept but …
(edit) @2680   10 years Peter fixes #699
(edit) @2679   10 years Peter extend test. refs #699
(edit) @2673   10 years Peter merge release 0.8 into trunk
(edit) @2662   10 years Peter implementing score and p-value for Kendall's tau (refs #494).
(edit) @2649   10 years Peter skeleton for class Kendall (refs #494).
(edit) @2643   10 years Peter remove spearman.test from XFAIL
(edit) @2634   10 years Peter skeleton for Spearman correlation class. refs #493
(edit) @2584   10 years Peter prefer alphabetical order
(edit) @2545   10 years Peter correct dependencies
(edit) @2540   10 years Peter test for YAT_SVN_RELEASE_YEAR. refs #668
(edit) @2539   10 years Peter test for YAT_REVISION_HEADER and fix tests for sister macros. refs #668
(edit) @2538   10 years Peter test for macro YAT_SVN_REVISION. refs #668
(edit) @2536   10 years Peter test for YAT_PROG_MOVE_IF_CHANGE. refs #668
(edit) @2535   10 years Peter test for macro YAT_AM_HAVE_SVN_WC. refs #668
(edit) @2525   10 years Peter correct test dependencies
(edit) @2524   10 years Peter update to autoconf-archive 2011-07-17 and correct some dependencies …
(edit) @2517   10 years Peter use common_defs in documentation_test. Change name to doxygen_test to …
(edit) @2510   10 years Peter added TukeyBiweightEstimator?. closes #666
(edit) @2497   10 years Peter Avoid using deprecated macros AX_{CXXCPP,CXX,LD}_CHECK_FLAG. Instead …
(edit) @2490   10 years Peter correct typos in EXTRA_DIST
(edit) @2484   10 years Peter distribute test data
(edit) @2477   10 years Peter use dir build-aux in yat-hello
(edit) @2458   10 years Peter Always detect '--help' (fixes #637). Change CommandLine::parse so the …
(edit) @2452   10 years Peter remove test/data/Makefile. distribute small.gff3
(edit) @2445   10 years Peter adding a macro similar to AC_MSG_ERROR with the difference that it …
(edit) @2442   10 years Peter distribute yat hello tarball and clarify that sources live in srcdir
(edit) @2439   10 years Peter copy files with 'cp' rather than 'aclocal'
(edit) @2438   10 years Peter Move yathello test from maintainer-check to installcheck, which means …
(edit) @2421   10 years Peter avoid installcheck failure (it tried to run yat-config.install).
(edit) @2420   10 years Peter avoid modifying yat-config during installation. Instead have a …
(edit) @2413   11 years Peter refs #651. large_file.test doesn't use libyat so no need to link …
(edit) @2370   11 years Peter closes #646
(edit) @2368   11 years Peter new class omic::Codon
(edit) @2366   11 years Peter New class GenomicPosition?
(edit) @2345   11 years Peter correcting dependency for yat_lt_link_ifelse_test. refs #496
(edit) @2341   11 years Peter New namespace omic and new class omic::DNA. closes #377
(edit) @2324   11 years Peter new class KernelPCA. closes #639
(edit) @2305   11 years Peter new function: split(3)
(edit) @2291   11 years Peter refs #635. New classes Segment and SegmentSet?.
(edit) @2264   11 years Peter prefer hard-coding name yat because it increases readability and is …
(edit) @2259   11 years Peter refs #596. Aded a class Container2D that can be used to check the …
(edit) @2250   11 years Peter fixed a doc typo and fixed lazy dependencies for documentation_test. …
(edit) @2245   11 years Peter first version of macro YAT_LT_LINK_IFELSE. Currently limited to C++ …
(edit) @2237   11 years Peter fix lazycheck dependencies. refs #475 and #618
(edit) @2236   11 years Peter avoid long lines
(edit) @2232   11 years Peter refs #475. added a lazycheck target; will need some docs in test/README.
(edit) @2231   11 years Peter only recompile tests that are needed (i.e. TESTS) refs #475.
(edit) @2229   11 years Peter Setting AM_DEFAULT_SOURCE_EXT and no need to declare source file for …
(edit) @2202   11 years Peter merging release 0.6 into trunk
(edit) @2121   12 years Peter updating copyrights to uniform encoding in them.
(edit) @2119   12 years Peter converted files to utf-8. fixes #577
(edit) @2110   12 years Peter remove leftover
(edit) @2047   12 years Peter closes #520 and refs #521. Implements the interface defined in #520
(edit) @2032   12 years Peter fixes #555
(edit) @1990   12 years Peter refs #415. First implementation of a merge, but no docs yet
(edit) @1989   12 years Peter refs #415. added test, interface and empty implementation for merge
(edit) @1954   12 years Jari Häkkinen Merged patch release 0.5.3 to the trunk. Delta 0.5.3 - 0.5.2
(edit) @1931   12 years Peter adding a test for static linking with libyat. closes #511
(edit) @1901   12 years Peter move test dirs to its own directory in order to avoid polluting the …
(edit) @1897   12 years Peter fixes #522. Introduced a variable YAT_PRIMARY_LIBS that is YAT_LIBS …
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