

@1015

14 years 
Peter 
changing class names vectorView => VectorView? and vectorBase => …



@1013

14 years 
Markus Ringnér 
Adding functionality tests for NCC



@1012

14 years 
Markus Ringnér 
Fixed bug in weighted euclidean distance calculation



@1009

14 years 
Peter 
merging branch peterdev into trunk delta 1008:994



@1001

14 years 
Peter 
reset errno to zero when it is an expected error



@1000

14 years 
Jari Häkkinen 
trac moved to new location.



@999

14 years 
Jari Häkkinen 
Copyright statement added.



@988

14 years 
Jari Häkkinen 
Removing potential signed/unsigned clash.



@981

14 years 
Peter 
adding convenient class for help option



@980

14 years 
Peter 
adding possibility to make option required



@979

14 years 
Peter 
fixing bug in OptionFile?. Dont try to create FileUtil? for option not …



@975

14 years 
Peter 
adding Option class for argument associated with a file, and fixed …



@970

14 years 
Peter 
refs #242



@965

14 years 
Peter 
Adding CommandLine? class. finishes #240



@948

14 years 
Markus Ringnér 
Adding support and checks for intended lookups in classifiers



@943

14 years 
Peter 
removing variables not needed and modified AM_INIT_AUTOMAKE to modern form



@932

14 years 
Peter 
median and percentile functions now take iterators rather than vectors



@931

14 years 
Markus Ringnér 
Working on ticket:259. Removed old Distance see ticket:250



@926

14 years 
Markus Ringnér 
Fixing minor mistakes so things gets installed with make install



@925

14 years 
Markus Ringnér 
NCC and IGP have been changed to templates on Distance



@922

14 years 
Jari Häkkinen 
Fixes #190. configure now checks for quite Nan. Check for this removed …



@918

14 years 
Peter 
modifing tests to fit new implementation



@916

14 years 
Peter 
Sorry this commit is a bit to big.
Adding a yat_assert. The yat …



@904

14 years 
Peter 
removing assert from header file



@903

14 years 
Markus Ringnér 
Forgot this test in the last checkin.



@901

14 years 
Markus Ringnér 
Added a template KNN classifier where the distance measure is the …



@900

14 years 
Markus Ringnér 
Refs #251. Fixed so the unweighted distances are at the …



@898

14 years 
Markus Ringnér 
A first suggestion for how to adress #250. Also removed contamination …



@897

14 years 
Peter 
removing keyword that was mistakingly added before



@895

14 years 
Peter 
Another try, hm…



@894

14 years 
Peter 
setting missing property Id on files



@891

14 years 
Markus Ringnér 
Minor modifications



@890

14 years 
Markus Ringnér 
Refs #245 #246 #247



@889

14 years 
Markus Ringnér 
Refs #245. A new structure to calculate distances between vectors that …



@887

14 years 
Peter 
made add function template so it accepts AveragerWeighted? too. Also …



@885

14 years 
Peter 
adding some cleaning



@883

14 years 
Peter 
fixing problems with iterator > const_iterator conversion



@882

14 years 
Peter 
fixing includes  sorry about that



@881

14 years 
Peter 
merged constIterator into Iterator and added an extra template …



@880

14 years 
Peter 
refs #244



@879

14 years 
Markus Ringnér 
Added support to utility::vector for gslfunctions that finds indices …



@877

14 years 
Markus Ringnér 
This revision breaks the vector_test. I know this is against the rules …



@875

14 years 
Peter 
rewriting SW algo, making code clearer, and perhaps removing a few bugs...?



@870

14 years 
Peter 
After reinstalling yat, the issue vanished, so here is the test for …



@869

14 years 
Peter 
Adding SmithWaterman local alignment and modified ssearch to use this …



@867

14 years 
Peter 
adding function doing a SSEARCH between two strings



@865

14 years 
Peter 
changing URL to http://trac.thep.lu.se/trac/yat



@864

14 years 
Markus Ringnér 
Added a lot of tests to feature_selection_test



@862

14 years 
Markus Ringnér 
Fixed bug in InputRanker? that sometimes gave rise to a bus error …



@848

14 years 
Jari Häkkinen 
Merged log:/branches/0.3.1#838:846 to trunk.



@833

15 years 
Jari Häkkinen 
Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …



@831

15 years 
Peter 
Refs #185.



@830

15 years 
Jari Häkkinen 
Fixes #206.



@829

15 years 
Jari Häkkinen 
Fixes #173.



@828

15 years 
Peter 
Generalized ConsenusInputRanker?, Fixes #151



@824

15 years 
Peter 
Moved Ensemble stuff in subset_egnerator_test to ensemble_test. Also …



@822

15 years 
Peter 
redesigned tTest fixes #212 and #156



@821

15 years 
Peter 
Modified ROC class to use AUC class in calculation of ROC area. Refs #101



@820

15 years 
Peter 
Changed name again. ROCScore is now called AUC. Also fixed several …



@819

15 years 
Peter 



@816

15 years 
Peter 
test for Distance. Fixes #198



@814

15 years 
Peter 
fixes #66



@813

15 years 
Peter 
Predict in NBC. Fixes #57



@806

15 years 
Peter 
removed test as well :O



@798

15 years 
Jari Häkkinen 
Removed unnecessary #include. Added tests for random number distributions.



@796

15 years 
Jari Häkkinen 
Fixes #201.



@795

15 years 
Peter 
confusing to use argv[0] since it is nout test/vector_test but rather …



@793

15 years 
Jari Häkkinen 
Fixes #193. Last test for the new functionality added to matrix.



@792

15 years 
Jari Häkkinen 
Addresses #193. matrix now works as outlined in the ticket
discussion. …



@790

15 years 
Jari Häkkinen 
Addresses #193. Fixing doxygen docs, and operator=.



@789

15 years 
Jari Häkkinen 
Addresses #193. vector now works as outlined here. Added some …



@786

15 years 
Peter 
added a test in vector_test



@784

15 years 
Jari Häkkinen 
References #155. Removed potential null pointer usage. Some unwanted …



@782

15 years 
Jari Häkkinen 
Fixes #195.



@781

15 years 
Peter 
changing name to ROCScore and also added some cassert includes



@779

15 years 
Peter 
Refs #101



@775

15 years 
Jari Häkkinen 
Fixes #200.



@774

15 years 
Jari Häkkinen 
Fixes #194.



@762

15 years 
Jari Häkkinen 
Fixes #76. Creating/recreating BLAS support matrix only when needed.



@759

15 years 
Jari Häkkinen 
Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed …



@747

15 years 
Peter 
replaced includes in header files with forward declarations when …



@742

15 years 
Peter 
added test that LinearWeighte? is equal to PolynomialWeighted?(1) fixes #166



@741

15 years 
Peter 
fixes #161 and #164



@740

15 years 
Peter 
added more test in MultiDimWeighted? and moved some stuff to be …



@739

15 years 
Peter 
fixes #178 and removes a bug in MultiDimensional?



@731

15 years 
Peter 
added test for multidimensional weighted and straight version



@730

15 years 
Peter 
fixes #167 and #160



@729

15 years 
Peter 
Fixes #159. Also removed some inlines in OneDimensionalWeighted? by …



@727

15 years 
Peter 
fixes #177



@726

15 years 
Peter 
fixes #165 added test checking Linear Regression is equivalent to …



@724

15 years 
Jari Häkkinen 
Removed redundant #includes.



@723

15 years 
Jari Häkkinen 
Fixes #10. Removed read_to*(std::vector..) functionality.



@722

15 years 
Markus Ringnér 
Closes #129



@712

15 years 
Jari Häkkinen 
Forgot to check in FileUtil? test program.



@711

15 years 
Jari Häkkinen 
Fixes #1 and #80. Interface changed.



@710

15 years 
Jari Häkkinen 
Addresses #1 and #80. Changed FileIO to FileUtil? and added tests on …



@704

15 years 
Markus Ringnér 
Fixes #104. Also fixed inline bug in Averager.h



@702

15 years 
Peter 
Refs #81 moved mse_ to inherited classes and made mse() pure virtual …



@682

15 years 
Jari Häkkinen 
Addresses #153. Moved regression files to .../yat/regression.



@680

15 years 
Jari Häkkinen 
Addresses #153. Introduced yat namespace. Removed alignment namespace. …


