source: trunk/test

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Diff Rev Age Author Log Message
(edit) @2960   9 years Peter merge patch release 0.10.1 into trunk
(edit) @2951   9 years Peter add deps for lazycheck
(edit) @2950   9 years Peter test for yat.pc. closes #734
(edit) @2946   9 years Peter avoid duplication
(edit) @2943   9 years Peter merge release 0.10 into trunk
(edit) @2932   9 years Peter remove misleading comment as these files are no longer direct input to …
(edit) @2927   9 years Peter remove old core dumps in test prologue (to avoid accumulation of …
(edit) @2919   9 years Peter update copyright years
(edit) @2908   9 years Peter copy tests from http://dev.thep.lu.se/svndigest code. refs #717
(edit) @2902   9 years Peter test for bam_pair_analyse. refs #729
(edit) @2895   9 years Peter add two tests for bam functionality
(edit) @2894   9 years Peter fix VPATH build issues
(edit) @2893   9 years Peter run (also C++) tests in specific test dir so test can create temporary …
(edit) @2891   9 years Peter check for samtools in configure; create bam file in 'make check' if we …
(edit) @2889   9 years Peter Binomial distribution. fixes #730
(edit) @2888   9 years Peter add example SAM file. refs #729
(edit) @2881   9 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
(edit) @2879   9 years Peter split function that splits on several chars
(edit) @2867   9 years Peter A log2 function similar to std::log10.
(edit) @2865   9 years Peter rename record file because file named 'conftest*' are deleted inside …
(edit) @2858   9 years Peter closes #725
(edit) @2857   9 years Peter closes #726
(edit) @2853   9 years Peter merge patch release 0.9.1 into trunk
(edit) @2837   9 years Peter avoid ancient inclusion guards around '#include <config.h>'
(edit) @2817   9 years Peter update copyright years
(edit) @2815   9 years Peter closes #706. Implement a generalization of SmithWaternan? and …
(edit) @2809   9 years Peter closes #705. Create a common interface class for average classes …
(edit) @2806   9 years Peter avoid spurious error on OSX Tiger on which 'rm foo/.*' tries to remove …
(edit) @2805   9 years Peter avoid autoconf warnings in tests and do not delete testdir in test …
(edit) @2803   9 years Peter fixed spurious test failures as well as a bug in operator+=. refs #705
(edit) @2802   9 years Peter adding documentation and tests. Remove private member count_ (not …
(edit) @2799   9 years Peter first version of class Averager4. refs #705
(edit) @2798   9 years Peter merge release 0.8.2 into trunk
(edit) @2787   9 years Peter update coyright years
(edit) @2784   9 years Jari Häkkinen Resolving precision issues on my macbook pro.
(edit) @2769   9 years Peter refs #568. test using multithreaded RNG
(edit) @2762   9 years Peter set dependency for doxygen_test.sh
(edit) @2761   9 years Peter refs #494. fix approx p-value with ties
(edit) @2760   9 years Peter allow copy and assignment. refs #494
(edit) @2759   9 years Peter add test for exact p-value with ties. refs #494
(edit) @2758   9 years Peter test for approx p-value with ties refs #494
(edit) @2757   9 years Peter change definition of tau in presence of ties. refs #494
(edit) @2754   9 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
(edit) @2749   9 years Peter add small convenience Makefiles in subdirs. closes #703
(edit) @2746   9 years Peter reflect non-recursive Makefile
(edit) @2744   9 years Peter conform rules make rules for yat-hello.1.0.tar.gz, yat-config and …
(edit) @2742   9 years Peter minor speedup in DNA::complement
(edit) @2739   9 years Peter refs #703 using a non-recursive Makefile. Old Makefile.am are kept but …
(edit) @2736   9 years Peter fixes #702
(edit) @2735   9 years Peter fix matrix test and add new function trace
(edit) @2728   10 years Peter typo
(edit) @2724   10 years Peter set svncopyright:ignore property
(edit) @2721   10 years Peter add a remove function in KolmogorovSmirnov?
(edit) @2720   10 years Peter ROC: remove a data value. closes #688
(edit) @2718   10 years Peter implement ROC p-value handling weights and ties. closes #211
(edit) @2714   10 years Peter loosen test stringency to avoid spurious failure on RHEL6 with atlas
(edit) @2712   10 years Peter correct test. refs #211
(edit) @2709   10 years Peter refs #211. Changed how number of samples, n, is calculated in large …
(edit) @2708   10 years Peter tests for weighted ROC p-value. refs #211
(edit) @2707   10 years Peter remove trailing WS and fix indentation
(edit) @2706   10 years Peter avoid missing regression. remove trailing WS
(edit) @2705   10 years Peter make sure test catches possible regression (refs #508)
(edit) @2703   10 years Peter merge release 0.8.1 into trunk
(edit) @2698   10 years Peter remove trailing whitespace
(edit) @2694   10 years Peter extend test to check that cache is caching. closes #496
(edit) @2692   10 years Peter remove trailing whitespace
(edit) @2680   10 years Peter fixes #699
(edit) @2679   10 years Peter extend test. refs #699
(edit) @2673   10 years Peter merge release 0.8 into trunk
(edit) @2662   10 years Peter implementing score and p-value for Kendall's tau (refs #494).
(edit) @2650   10 years Peter more tests for Kendall. refs #494
(edit) @2649   10 years Peter skeleton for class Kendall (refs #494).
(edit) @2646   10 years Peter refs #493. test for ties
(edit) @2645   10 years Peter implement first version exact p-value. refs #493
(edit) @2643   10 years Peter remove spearman.test from XFAIL
(edit) @2642   10 years Peter refs #493. Implement p-value. Exact versions does not handle ties.
(edit) @2640   10 years Peter refs #493. Not sure how to handle weight so removed weighted …
(edit) @2638   10 years Peter refs #493. implemented Spearman::score
(edit) @2636   10 years Peter add missing file. refs #493
(edit) @2634   10 years Peter skeleton for Spearman correlation class. refs #493
(edit) @2622   10 years Peter prefer ending tests with exit_success
(edit) @2613   10 years Peter update copyright years
(edit) @2611   10 years Peter fixes #680 and #679
(edit) @2608   10 years Peter delete trailing newlines
(edit) @2606   10 years Peter remove confusing variable, move_if-change, never used
(edit) @2605   10 years Peter remove move-if-change and use the one generated at autoconf time
(edit) @2601   10 years Peter merge release 0.7.3 into trunk. A couple of conflict and needed fix …
(edit) @2595   10 years Peter fixes #678. ROC p_value
(edit) @2593   10 years Peter add test for #678
(edit) @2585   10 years Peter handle ties in exact calculation of ROC p-value. fixes #144
(edit) @2584   10 years Peter prefer alphabetical order
(edit) @2583   10 years Peter Fix test yat_revision_header_test.sh so it works also when srcdir is …
(edit) @2558   10 years Peter refs #671. Follow Knuth's algorithm to calculate average and variance …
(edit) @2556   10 years Peter ROC: implement correction for ties in large sample approximation o …
(edit) @2552   10 years Peter YAT_REVISION_HEADER: avoid updating time-stamp of file.h.in if not …
(edit) @2551   10 years Peter refs #144. Fix ROC::area for the tied case
(edit) @2550   10 years Peter use macros EXIT_FAILURE and EXIT_SUCCESS
(edit) @2549   10 years Peter ROC: adding a test for ties case. refs #144
(edit) @2546   10 years Peter correct typo
(edit) @2545   10 years Peter correct dependencies
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