source: trunk/test

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Diff Rev Age Author Log Message
(edit) @4059   3 weeks Peter new function: round, which is rounding elements in a range with the …
(edit) @4058   3 weeks Peter a not-so-random number generator that can be used to fill containers …
(edit) @4057   6 weeks Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
(edit) @4053   7 weeks Peter add some test for correlation(Matrix); speed up, particuarly when …
(edit) @4045   2 months Peter add missing file
(edit) @4044   2 months Peter new function multiprocess; closes #958
(edit) @4043   2 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
(edit) @4036   4 months Peter closes #963. New class PercentileConfidenceInterval?
(edit) @4035   4 months Peter skeleton for PercentileConfidenceInterval?; refs #963
(edit) @4034   4 months Peter Decouple variables for extra programs and test programs, to allow …
(edit) @4032   4 months Peter merge release 0.18.1 into trunk
(edit) @4027   4 months Peter refs #968; fix implementation of SegmentSet::insert_merge and add some …
(edit) @4022   4 months Peter prefer std::shared_ptr over boost
(edit) @4021   6 months Peter closes #961. Improve message in thrown exceptions.
(edit) @4019   6 months Peter merge 0.18 into trunk
(edit) @4009   7 months Peter closes #965; Default constructor for DiscreteGeneral?
(edit) @4003   7 months Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
(edit) @3999   7 months Peter update copyright years
(edit) @3987   9 months Peter merge release 0.17.2 into trunk
(edit) @3980   9 months Peter fixes #957. NegativeBinomial? now inherits from Multivariate
(edit) @3966   9 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
(edit) @3963   9 months Peter new function supposed to be used by GSL error handler, resulting in a …
(edit) @3961   9 months Peter fixes #845. Replace default GSL error handler in tests with one that …
(edit) @3958   10 months Peter change to using std distributions instead of boost. Some distributions …
(edit) @3957   10 months Peter closes #890. Implement normalizer::UnityScaler?.
(edit) @3953   10 months Peter refs #890. Implement RangeNormalizer?, a generalization of Centralizer …
(edit) @3949   10 months Peter use std::thread rather than boost::thread in test, refs #953
(edit) @3948   10 months Peter replace boost::thread with std::thread in Scheduler. refs #953
(edit) @3945   10 months Peter avoid hard-coding autotools in tests and instead set shell variables …
(edit) @3943   10 months Peter merge r3941 into trunk
(edit) @3938   10 months Peter let configure fail if compiler is not a C++11 compiler. …
(edit) @3936   10 months Peter merge changeset r3935 into trunk
(edit) @3933   10 months Peter package is called zlib
(edit) @3930   10 months Peter merge release 0.17.1 into trunk
(edit) @3925   10 months Peter avoid warnings in c++98
(edit) @3912   12 months Peter boost random classes beta_distribution, hyperexponential_distribution …
(edit) @3910   12 months Peter add missing file
(edit) @3906   12 months Peter fix bug introduced in r3890; variable is now named have_htslib
(edit) @3904   12 months Peter Closes #892 Speed up matrix multiplications when they involve a …
(edit) @3902   12 months Peter closes #915. New functions that read and write numbers in binary format.
(edit) @3901   12 months Peter prefer tests in alphabetical order
(edit) @3900   13 months Peter closes #944; add configure check whether class is availabale in boost …
(edit) @3898   14 months Peter closes #858 and #869
(edit) @3897   14 months Peter refs #869 and #858
(edit) @3896   14 months Peter fixes #943, avoid compiler warning about deprecated boost header
(edit) @3895   14 months Peter miss missing source file for test; refs #869
(edit) @3894   14 months Peter extend DiscreteUniform? so it fulfills the requirements for …
(edit) @3893   14 months Peter merge latest revision from stable-0.17 branch into trunk
(edit) @3891   14 months Peter fixes #933
(edit) @3890   14 months Peter Both HAVE_HTSLIB and have_htslib we AC_SUBST'd with different output, …
(edit) @3889   14 months Peter closes #941
(edit) @3888   14 months Peter fix compilation errors in --with-htslib mode introduced in r3883, refs #939
(edit) @3883   14 months Peter remove support for building against libbam (which allows us to remove …
(edit) @3879   14 months Peter add missing file from r3878
(edit) @3878   14 months Peter New class BamPairIterator2 that takes a sort range of bam reads as …
(edit) @3875   15 months Peter merge release 0.17 into trunk
(edit) @3871   15 months Peter closes #932
(edit) @3870   15 months Peter merge changes from 0.17-stable branch
(edit) @3855   17 months Peter updating copyright statements
(edit) @3851   17 months Peter merge release 0.16.3 into trunk.
(edit) @3848   20 months Peter add functionality to alter number of threads used by Scheduler. closes #910
(edit) @3846   20 months Peter avoid compiler warning about ignoring return value from chdir
(edit) @3844   20 months Peter autoreconf uses libtoolize so skip when that is absent rather than …
(edit) @3840   21 months Peter merge release yat-0.16.2 into trunk
(edit) @3832   22 months Peter merge release 0.16.1 intro trunk
(edit) @3828   22 months Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
(edit) @3827   22 months Peter refs #916. add test case when using Scheduler after calling wait().
(edit) @3826   22 months Peter function to access number of threads in Scheduler. closes #914
(edit) @3825   22 months Peter closes #926 In tests call configure set CXX to the one found at …
(edit) @3823   22 months Peter Merge release 0.16 into trunk
(edit) @3819   22 months Peter Remove leftover from recursive Makefile. 'test/doxygen_test.log' …
(edit) @3816   22 months Peter revert r3815 as it didn't fix the problem; instead skip doxygen test …
(edit) @3814   22 months Peter decrease stringency in test, to avoid spurious test failure on osx …
(edit) @3803   2 years Peter implement wrapper function around getcwd. closes #921.
(edit) @3802   2 years Peter closes #918. implement function Pileup::size
(edit) @3801   2 years Peter implement reverse iterator in Pileup. closes #919
(edit) @3800   2 years Peter allow multiple arguments in yat-config. closes #911
(edit) @3792   2 years Peter update copyright years
(edit) @3788   2 years Peter avoid compiler warnings with GCC v6.4.0
(edit) @3783   2 years Peter upgrade to autoconf-archive-2019.01.06 also files not used in …
(edit) @3774   3 years Peter implement VcfIterator?. refs #905
(edit) @3773   3 years Peter add function in VcfFile? to read next VCF; refs #905
(edit) @3771   3 years Peter refs #905; improve docs of VcfFile?; fix so object can be re-opened; …
(edit) @3767   3 years Peter include test data (foo.vcf) in dist
(edit) @3766   3 years Peter add missing dependency and fix typo in 'else'-rule
(edit) @3763   3 years Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
(edit) @3759   3 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
(edit) @3750   3 years Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
(edit) @3747   3 years Peter new class for an VCF entry; behaviour of default construction still …
(edit) @3746   3 years Peter new wrapper function around posix function 'symlink'
(edit) @3745   3 years Peter add function calculating correlation matrix
(edit) @3743   3 years Peter merge release 0.15.1 into trunk
(edit) @3733   3 years Peter convenience functions to access strand of alignment
(edit) @3732   3 years Peter one more convenience function to access BamRead::flag; refs #827 and r3731
(edit) @3731   3 years Peter added functions to access and modify bits in flag; closes #827
(edit) @3730   3 years Peter new function print_what() to print error message from std::nested_exception
(edit) @3726   3 years Peter correct include
(edit) @3725   3 years Peter closes #848
(edit) @3723   3 years Peter initial version of class for chi-squared test
(edit) @3709   4 years Peter new class that impements a Perceptron - special case of multivariate …
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