source: trunk/test

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Diff Rev Age Author Log Message
(edit) @4059   13 months Peter new function: round, which is rounding elements in a range with the …
(edit) @4058   13 months Peter a not-so-random number generator that can be used to fill containers …
(edit) @4057   14 months Peter closes #798; new classes BamPairBuffer? and a more general SortedBuffer?.
(edit) @4053   14 months Peter add some test for correlation(Matrix); speed up, particuarly when …
(edit) @4045   15 months Peter add missing file
(edit) @4044   15 months Peter new function multiprocess; closes #958
(edit) @4043   15 months Peter Add capacity to Queue and PriorityQueue?, which is a feature to limit …
(edit) @4036   16 months Peter closes #963. New class PercentileConfidenceInterval?
(edit) @4035   16 months Peter skeleton for PercentileConfidenceInterval?; refs #963
(edit) @4034   16 months Peter Decouple variables for extra programs and test programs, to allow …
(edit) @4032   16 months Peter merge release 0.18.1 into trunk
(edit) @4027   16 months Peter refs #968; fix implementation of SegmentSet::insert_merge and add some …
(edit) @4022   17 months Peter prefer std::shared_ptr over boost
(edit) @4021   18 months Peter closes #961. Improve message in thrown exceptions.
(edit) @4019   19 months Peter merge 0.18 into trunk
(edit) @4009   19 months Peter closes #965; Default constructor for DiscreteGeneral?
(edit) @4003   20 months Peter Add a constructor Aligner::Cigar(string) (closes #962) Add a function …
(edit) @3999   20 months Peter update copyright years
(edit) @3987   21 months Peter merge release 0.17.2 into trunk
(edit) @3980   21 months Peter fixes #957. NegativeBinomial? now inherits from Multivariate
(edit) @3966   22 months Peter merge changes in 0.17-stable branch (since 0.17.1) into trunk.
(edit) @3963   22 months Peter new function supposed to be used by GSL error handler, resulting in a …
(edit) @3961   22 months Peter fixes #845. Replace default GSL error handler in tests with one that …
(edit) @3958   22 months Peter change to using std distributions instead of boost. Some distributions …
(edit) @3957   22 months Peter closes #890. Implement normalizer::UnityScaler?.
(edit) @3953   22 months Peter refs #890. Implement RangeNormalizer?, a generalization of Centralizer …
(edit) @3949   22 months Peter use std::thread rather than boost::thread in test, refs #953
(edit) @3948   22 months Peter replace boost::thread with std::thread in Scheduler. refs #953
(edit) @3945   22 months Peter avoid hard-coding autotools in tests and instead set shell variables …
(edit) @3943   23 months Peter merge r3941 into trunk
(edit) @3938   23 months Peter let configure fail if compiler is not a C++11 compiler. …
(edit) @3936   23 months Peter merge changeset r3935 into trunk
(edit) @3933   23 months Peter package is called zlib
(edit) @3930   23 months Peter merge release 0.17.1 into trunk
(edit) @3925   23 months Peter avoid warnings in c++98
(edit) @3912   2 years Peter boost random classes beta_distribution, hyperexponential_distribution …
(edit) @3910   2 years Peter add missing file
(edit) @3906   2 years Peter fix bug introduced in r3890; variable is now named have_htslib
(edit) @3904   2 years Peter Closes #892 Speed up matrix multiplications when they involve a …
(edit) @3902   2 years Peter closes #915. New functions that read and write numbers in binary format.
(edit) @3901   2 years Peter prefer tests in alphabetical order
(edit) @3900   2 years Peter closes #944; add configure check whether class is availabale in boost …
(edit) @3898   2 years Peter closes #858 and #869
(edit) @3897   2 years Peter refs #869 and #858
(edit) @3896   2 years Peter fixes #943, avoid compiler warning about deprecated boost header
(edit) @3895   2 years Peter miss missing source file for test; refs #869
(edit) @3894   2 years Peter extend DiscreteUniform? so it fulfills the requirements for …
(edit) @3893   2 years Peter merge latest revision from stable-0.17 branch into trunk
(edit) @3891   2 years Peter fixes #933
(edit) @3890   2 years Peter Both HAVE_HTSLIB and have_htslib we AC_SUBST'd with different output, …
(edit) @3889   2 years Peter closes #941
(edit) @3888   2 years Peter fix compilation errors in --with-htslib mode introduced in r3883, refs #939
(edit) @3883   2 years Peter remove support for building against libbam (which allows us to remove …
(edit) @3879   2 years Peter add missing file from r3878
(edit) @3878   2 years Peter New class BamPairIterator2 that takes a sort range of bam reads as …
(edit) @3875   2 years Peter merge release 0.17 into trunk
(edit) @3871   2 years Peter closes #932
(edit) @3870   2 years Peter merge changes from 0.17-stable branch
(edit) @3855   2 years Peter updating copyright statements
(edit) @3851   2 years Peter merge release 0.16.3 into trunk.
(edit) @3848   3 years Peter add functionality to alter number of threads used by Scheduler. closes #910
(edit) @3846   3 years Peter avoid compiler warning about ignoring return value from chdir
(edit) @3844   3 years Peter autoreconf uses libtoolize so skip when that is absent rather than …
(edit) @3840   3 years Peter merge release yat-0.16.2 into trunk
(edit) @3832   3 years Peter merge release 0.16.1 intro trunk
(edit) @3828   3 years Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
(edit) @3827   3 years Peter refs #916. add test case when using Scheduler after calling wait().
(edit) @3826   3 years Peter function to access number of threads in Scheduler. closes #914
(edit) @3825   3 years Peter closes #926 In tests call configure set CXX to the one found at …
(edit) @3823   3 years Peter Merge release 0.16 into trunk
(edit) @3819   3 years Peter Remove leftover from recursive Makefile. 'test/doxygen_test.log' …
(edit) @3816   3 years Peter revert r3815 as it didn't fix the problem; instead skip doxygen test …
(edit) @3814   3 years Peter decrease stringency in test, to avoid spurious test failure on osx …
(edit) @3803   3 years Peter implement wrapper function around getcwd. closes #921.
(edit) @3802   3 years Peter closes #918. implement function Pileup::size
(edit) @3801   3 years Peter implement reverse iterator in Pileup. closes #919
(edit) @3800   3 years Peter allow multiple arguments in yat-config. closes #911
(edit) @3792   3 years Peter update copyright years
(edit) @3788   3 years Peter avoid compiler warnings with GCC v6.4.0
(edit) @3783   3 years Peter upgrade to autoconf-archive-2019.01.06 also files not used in …
(edit) @3774   4 years Peter implement VcfIterator?. refs #905
(edit) @3773   4 years Peter add function in VcfFile? to read next VCF; refs #905
(edit) @3771   4 years Peter refs #905; improve docs of VcfFile?; fix so object can be re-opened; …
(edit) @3767   4 years Peter include test data (foo.vcf) in dist
(edit) @3766   4 years Peter add missing dependency and fix typo in 'else'-rule
(edit) @3763   4 years Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
(edit) @3759   4 years Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
(edit) @3750   4 years Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
(edit) @3747   4 years Peter new class for an VCF entry; behaviour of default construction still …
(edit) @3746   4 years Peter new wrapper function around posix function 'symlink'
(edit) @3745   4 years Peter add function calculating correlation matrix
(edit) @3743   4 years Peter merge release 0.15.1 into trunk
(edit) @3733   4 years Peter convenience functions to access strand of alignment
(edit) @3732   4 years Peter one more convenience function to access BamRead::flag; refs #827 and r3731
(edit) @3731   4 years Peter added functions to access and modify bits in flag; closes #827
(edit) @3730   4 years Peter new function print_what() to print error message from std::nested_exception
(edit) @3726   4 years Peter correct include
(edit) @3725   4 years Peter closes #848
(edit) @3723   4 years Peter initial version of class for chi-squared test
(edit) @3709   5 years Peter new class that impements a Perceptron - special case of multivariate …
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