source: trunk/test

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Diff Rev Age Author Log Message
(edit) @875   16 years Peter rewriting SW algo, making code clearer, and perhaps removing a few bugs...?
(edit) @870   16 years Peter After re-installing yat, the issue vanished, so here is the test for …
(edit) @869   16 years Peter Adding Smith-Waterman local alignment and modified ssearch to use this …
(edit) @867   16 years Peter adding function doing a SSEARCH between two strings
(edit) @865   16 years Peter changing URL to ​http://trac.thep.lu.se/trac/yat
(edit) @864   16 years Markus Ringnér Added a lot of tests to feature_selection_test
(edit) @862   16 years Markus Ringnér Fixed bug in InputRanker? that sometimes gave rise to a bus error …
(edit) @848   16 years Jari Häkkinen Merged log:/branches/0.3.1#838:846 to trunk.
(edit) @833   16 years Jari Häkkinen Addresses #217. Fixed so that 'make distcheck' compiles but tests fail …
(edit) @831   16 years Peter Refs #185.
(edit) @830   16 years Jari Häkkinen Fixes #206.
(edit) @829   16 years Jari Häkkinen Fixes #173.
(edit) @828   16 years Peter Generalized ConsenusInputRanker?, Fixes #151
(edit) @824   16 years Peter Moved Ensemble stuff in subset_egnerator_test to ensemble_test. Also …
(edit) @822   16 years Peter redesigned tTest fixes #212 and #156
(edit) @821   16 years Peter Modified ROC class to use AUC class in calculation of ROC area. Refs #101
(edit) @820   16 years Peter Changed name again. ROCScore is now called AUC. Also fixed several …
(edit) @819   16 years Peter
(edit) @816   16 years Peter test for Distance. Fixes #198
(edit) @814   16 years Peter fixes #66
(edit) @813   16 years Peter Predict in NBC. Fixes #57
(edit) @806   16 years Peter removed test as well :O
(edit) @798   16 years Jari Häkkinen Removed unnecessary #include. Added tests for random number distributions.
(edit) @796   16 years Jari Häkkinen Fixes #201.
(edit) @795   16 years Peter confusing to use argv[0] since it is nout test/vector_test but rather …
(edit) @793   16 years Jari Häkkinen Fixes #193. Last test for the new functionality added to matrix.
(edit) @792   16 years Jari Häkkinen Addresses #193. matrix now works as outlined in the ticket discussion. …
(edit) @790   16 years Jari Häkkinen Addresses #193. Fixing doxygen docs, and operator=.
(edit) @789   16 years Jari Häkkinen Addresses #193. vector now works as outlined here. Added some …
(edit) @786   16 years Peter added a test in vector_test
(edit) @784   16 years Jari Häkkinen References #155. Removed potential null pointer usage. Some unwanted …
(edit) @782   16 years Jari Häkkinen Fixes #195.
(edit) @781   16 years Peter changing name to ROCScore and also added some cassert includes
(edit) @779   16 years Peter Refs #101
(edit) @775   16 years Jari Häkkinen Fixes #200.
(edit) @774   16 years Jari Häkkinen Fixes #194.
(edit) @762   16 years Jari Häkkinen Fixes #76. Creating/recreating BLAS support matrix only when needed.
(edit) @759   16 years Jari Häkkinen Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed …
(edit) @747   16 years Peter replaced includes in header files with forward declarations when …
(edit) @742   16 years Peter added test that LinearWeighte? is equal to PolynomialWeighted?(1) fixes #166
(edit) @741   16 years Peter fixes #161 and #164
(edit) @740   16 years Peter added more test in MultiDimWeighted? and moved some stuff to be …
(edit) @739   16 years Peter fixes #178 and removes a bug in MultiDimensional?
(edit) @731   16 years Peter added test for multidimensional weighted and straight version
(edit) @730   16 years Peter fixes #167 and #160
(edit) @729   16 years Peter Fixes #159. Also removed some inlines in OneDimensionalWeighted? by …
(edit) @727   16 years Peter fixes #177
(edit) @726   16 years Peter fixes #165 added test checking Linear Regression is equivalent to …
(edit) @724   16 years Jari Häkkinen Removed redundant #includes.
(edit) @723   16 years Jari Häkkinen Fixes #10. Removed read_to*(std::vector..) functionality.
(edit) @722   16 years Markus Ringnér Closes #129
(edit) @712   16 years Jari Häkkinen Forgot to check in FileUtil? test program.
(edit) @711   16 years Jari Häkkinen Fixes #1 and #80. Interface changed.
(edit) @710   16 years Jari Häkkinen Addresses #1 and #80. Changed FileIO to FileUtil? and added tests on …
(edit) @704   16 years Markus Ringnér Fixes #104. Also fixed inline bug in Averager.h
(edit) @702   16 years Peter Refs #81 moved mse_ to inherited classes and made mse() pure virtual …
(edit) @682   16 years Jari Häkkinen Addresses #153. Moved regression files to .../yat/regression.
(edit) @680   16 years Jari Häkkinen Addresses #153. Introduced yat namespace. Removed alignment namespace. …
(edit) @679   16 years Markus Ringnér Fixed some minor stuff so it compiles on eddie.thep.lu.se running g++3.2
(edit) @676   16 years Jari Häkkinen Fixed #83. This message applies to this revision and revision:675. …
(edit) @675   16 years Jari Häkkinen References #83. Changing project name to yat. Compilation will fail in …
(edit) @669   16 years Peter #closes #88. SAM score class added
(edit) @668   16 years Peter removing debug code
(edit) @667   16 years Peter refs #151 using Functor now in consensusinputranker to retrieve …
(edit) @666   16 years Peter refs #151, added IRRetreive functors and prepared ConsensusInputRanker? …
(edit) @645   17 years Markus Ringnér Minor things
(edit) @644   17 years Jari Häkkinen Set svndigest:ignore property on test data.
(edit) @642   17 years Peter adding class for selecting features by random
(edit) @640   17 years Peter fixes #132 and #95, and refs #135 replaced bool owner in DataLookup2D …
(edit) @634   17 years Markus Ringnér Fixed NCC predict to work with MatrixLookupWeighted?
(edit) @633   17 years Markus Ringnér Minor fix
(edit) @632   17 years Markus Ringnér Changes in NCC to support weight using MatrixLookupWeighted?. Still …
(edit) @628   17 years Peter fixes #116 and #90 removed classes KernelWeighted_SEV and …
(edit) @620   17 years Markus Ringnér Fixed problems with Averager that sometimes appeared as failures in …
(edit) @619   17 years Peter fixes #107 and refs #105 fixed bug in EnsembleBuilder? and removed some …
(edit) @617   17 years Jari Häkkinen Cleaned up stray gslapi stuff.
(edit) @616   17 years Jari Häkkinen Removed gslapi namespace and put the code into utility namespace. Move …
(edit) @615   17 years Peter ref #60 NOTE: there is most likely a bug around. I have removed the …
(edit) @611   17 years Markus Ringnér Fixes #100
(edit) @609   17 years Markus Ringnér Fixes #98
(edit) @605   17 years Peter simple test for FeatureSelector?
(edit) @604   17 years Peter ref #96 Changed InputRanker? to return vector of index rather than …
(edit) @603   17 years Peter set properties
(edit) @599   17 years Peter updated corresponding test... well it's not a test it's more of an example.
(edit) @594   17 years Peter closes #91 class parsing commandline
(edit) @593   17 years Markus Ringnér Fixed std includes to compile with g++ 4.1.
(edit) @588   17 years Markus Ringnér Added statistics functions to calculate the higher moments: skewness …
(edit) @586   17 years Peter closes #23 redesign of regression classes
(edit) @584   17 years Markus Ringnér Fixed so NCC and IGP works when there are NaNs? in centroids.
(edit) @583   17 years Markus Ringnér Forgot this one in last check in
(edit) @580   17 years Jari Häkkinen Removed LOCAL_INCLUDES.
(edit) @578   17 years Jari Häkkinen Removed stray file.
(edit) @565   17 years Peter removed default row/column in constructors (MatrixLookup? and DataLookup1D)
(edit) @559   17 years Peter some changes in EB
(edit) @554   17 years Markus Ringnér added small test
(edit) @551   17 years Markus Ringnér Added tests of two nested CrossSplitters? to crossvalidation_test
(edit) @538   17 years Peter corrected test for KernelLookup?
(edit) @537   17 years Peter forked tests and fixed bugs
(edit) @536   17 years Peter fixed problem with ConsensusInputranker? - Now all tests do pass
(edit) @534   17 years Peter bug fixes in MatrixLookup? and extended test
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