#
# ChangeLog for trunk/yat/regression
#
# Generated by Trac 1.2.3
# Jul 24, 2021, 2:03:36 PM
Tue, 30 Dec 2008 15:42:06 GMT Peter [1683]
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
prefer std::abs
Wed, 24 Dec 2008 01:43:04 GMT Peter [1676]
* trunk/yat/regression/AkimaInterpolation.h (modified)
* trunk/yat/regression/AkimaPeriodicInterpolation.h (modified)
* trunk/yat/regression/CSplineInterpolation.h (modified)
* trunk/yat/regression/CSplinePeriodicInterpolation.h (modified)
* trunk/yat/regression/GSLInterpolation.h (modified)
* trunk/yat/regression/LinearInterpolation.h (modified)
* trunk/yat/regression/PolynomialInterpolation.h (modified)
fixes #473 - declaring a private assignement operator in ...
Thu, 18 Dec 2008 20:39:25 GMT Peter [1663]
* trunk/yat/regression/Makefile.am (modified)
typos in Makefile.am - refs #466
Thu, 18 Dec 2008 16:11:21 GMT Peter [1661]
* trunk/test/interpolation_test.cc (modified)
* trunk/yat/regression/GSLInterpolation.h (modified)
refs #466: moved destructor to be (pure) virtual and public.
Tue, 16 Dec 2008 23:29:55 GMT Jari Häkkinen [1655]
* trunk/yat/regression/GSLInterpolation.cc (modified)
* trunk/yat/regression/GSLInterpolation.h (modified)
Addresses #466. Removed bsearch from the GSL wrapper.
Tue, 16 Dec 2008 16:29:35 GMT Peter [1654]
* trunk/yat/regression/GSLInterpolation.h (modified)
fixing what I tried to fix in [1653]
Tue, 16 Dec 2008 16:18:14 GMT Peter [1653]
* trunk/yat/regression/GSLInterpolation.h (modified)
fixing link. The link was invalid because the trailing '.' was ...
Tue, 16 Dec 2008 09:32:25 GMT Jari Häkkinen [1652]
* trunk/yat/regression/AkimaInterpolation.h (modified)
* trunk/yat/regression/AkimaPeriodicInterpolation.h (modified)
* trunk/yat/regression/CSplineInterpolation.h (modified)
* trunk/yat/regression/CSplinePeriodicInterpolation.h (modified)
* trunk/yat/regression/GSLInterpolation.h (modified)
* trunk/yat/regression/LinearInterpolation.h (modified)
* trunk/yat/regression/PolynomialInterpolation.h (modified)
Fixes #469. Added doxygen \since tag.
Sun, 14 Dec 2008 22:13:48 GMT Jari Häkkinen [1650]
* trunk/test/interpolation_test.cc (modified)
* trunk/yat/regression/GSLInterpolation.cc (modified)
* trunk/yat/regression/GSLInterpolation.h (modified)
Addresses #466. Added checks for GSL errors, improved docs, added ...
Sat, 13 Dec 2008 09:28:39 GMT Jari Häkkinen [1648]
* trunk/test/interpolation_test.cc (modified)
* trunk/yat/regression/GSLInterpolation.cc (modified)
* trunk/yat/regression/GSLInterpolation.h (modified)
* trunk/yat/regression/Makefile.am (modified)
Addresses #466. Added more GSL functionality, added constructor
tests.
Sat, 13 Dec 2008 08:45:44 GMT Jari Häkkinen [1647]
* trunk/yat/regression/AkimaInterpolation.cc (copied)
* trunk/yat/regression/AkimaInterpolation.h (copied)
* trunk/yat/regression/AkimaPeriodicInterpolation.cc (copied)
* trunk/yat/regression/AkimaPeriodicInterpolation.h (copied)
* trunk/yat/regression/CSplinePeriodicInterpolation.cc (copied)
* trunk/yat/regression/CSplinePeriodicInterpolation.h (copied)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/PolynomialInterpolation.cc (copied)
* trunk/yat/regression/PolynomialInterpolation.h (copied)
Addresses #466. Added more interpolation algorithms. The full set of ...
Sat, 13 Dec 2008 08:29:40 GMT Jari Häkkinen [1646]
* trunk/yat/regression/LinearInterpolation.cc (copied)
* trunk/yat/regression/LinearInterpolation.h (copied)
* trunk/yat/regression/Makefile.am (modified)
Addresses #466 added linear interpolation classes.
Sat, 13 Dec 2008 08:25:07 GMT Jari Häkkinen [1645]
* trunk/test/interpolation_test.cc (modified)
* trunk/yat/regression/CSplineInterpolation.cc (moved)
* trunk/yat/regression/CSplineInterpolation.h (moved)
* trunk/yat/regression/Makefile.am (modified)
Addresses #466. Changed name of CSpline to CSplineInterpolation.
Sat, 13 Dec 2008 08:14:51 GMT Jari Häkkinen [1644]
* trunk/yat/regression/CSpline.cc (modified)
* trunk/yat/regression/CSpline.h (modified)
* trunk/yat/regression/GSLInterpolation.cc (modified)
* trunk/yat/regression/GSLInterpolation.h (modified)
Addresses #466. Changed to VectorBase passing. Added documentation.
Sat, 13 Dec 2008 00:23:39 GMT Jari Häkkinen [1643]
* trunk/test/Makefile.am (modified)
* trunk/test/interpolation_test.cc (added)
* trunk/yat/regression/CSpline.cc (copied)
* trunk/yat/regression/CSpline.h (copied)
* trunk/yat/regression/GSLInterpolation.cc (copied)
* trunk/yat/regression/GSLInterpolation.h (copied)
* trunk/yat/regression/Makefile.am (modified)
Addresses #466 and #425. Added cubic spline interpolation (not ...
Fri, 12 Sep 2008 01:59:37 GMT Peter [1493]
* trunk/build_support/yat.am (deleted)
* trunk/test/Makefile.am (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/normalization/Makefile.am (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/utility/Makefile.am (modified)
got problems with yat.am in distcheck - easiest solution was to ...
Wed, 10 Sep 2008 08:41:36 GMT Jari Häkkinen [1487]
* trunk/AUTHORS (modified)
* trunk/ChangeLog (modified)
* trunk/Makefile.am (modified)
* trunk/NEWS (modified)
* trunk/README (modified)
* trunk/README.developer (modified)
* trunk/TODO (modified)
* trunk/bootstrap (modified)
* trunk/build_support/version.m4 (modified)
* trunk/build_support/yat-config.in (modified)
* trunk/build_support/yat.am (modified)
* trunk/build_support/yat.m4 (modified)
* trunk/build_support/yat.pc.in (modified)
* trunk/configure.ac (modified)
* trunk/doc/Makefile.am (modified)
* trunk/doc/Statistics.doxygen (modified)
* trunk/doc/build_tool.doxygen (modified)
* trunk/doc/concepts.doxygen (modified)
* trunk/doc/doxygen.config.in (modified)
* trunk/doc/first_page.doxygen.in (modified)
* trunk/doc/namespaces.doxygen (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/README (modified)
* trunk/test/Suite.cc (modified)
* trunk/test/Suite.h (modified)
* trunk/test/alignment_test.cc (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/commandline_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/crossvalidation_test.cc (modified)
* trunk/test/data/Makefile.am (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/data_weight_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/documentation_test.sh.in (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/environment.h.in (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/fileutil_test.cc (modified)
* trunk/test/index_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/iterator_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/knn_test.cc (modified)
* trunk/test/large_file_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/matrix_weighted_test.cc (modified)
* trunk/test/nbc_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/normalization_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/range_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/rnd_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/smart_ptr_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/target_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/utility_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/test/version_test.cc (modified)
* trunk/test/view_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/BootstrapSampler.cc (modified)
* trunk/yat/classifier/BootstrapSampler.h (modified)
* trunk/yat/classifier/ConsensusInputRanker.cc (modified)
* trunk/yat/classifier/ConsensusInputRanker.h (modified)
* trunk/yat/classifier/CrossValidationSampler.cc (modified)
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.cc (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/FeatureSelector.cc (modified)
* trunk/yat/classifier/FeatureSelector.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/FeatureSelectorRandom.cc (modified)
* trunk/yat/classifier/FeatureSelectorRandom.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.cc (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.cc (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/KNN_ReciprocalDistance.cc (modified)
* trunk/yat/classifier/KNN_ReciprocalDistance.h (modified)
* trunk/yat/classifier/KNN_ReciprocalRank.cc (modified)
* trunk/yat/classifier/KNN_ReciprocalRank.h (modified)
* trunk/yat/classifier/KNN_Uniform.cc (modified)
* trunk/yat/classifier/KNN_Uniform.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/KernelLookup.h (modified)
* trunk/yat/classifier/Kernel_MEV.cc (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Sampler.cc (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.cc (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/normalization/Centralizer.h (modified)
* trunk/yat/normalization/ColumnNormalizer.h (modified)
* trunk/yat/normalization/Makefile.am (modified)
* trunk/yat/normalization/QuantileNormalizer.cc (modified)
* trunk/yat/normalization/QuantileNormalizer.h (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AUC.cc (modified)
* trunk/yat/statistics/AUC.h (modified)
* trunk/yat/statistics/Average.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/EuclideanDistance.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/KolmogorovSmirnov.cc (modified)
* trunk/yat/statistics/KolmogorovSmirnov.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/Percentiler.cc (modified)
* trunk/yat/statistics/Percentiler.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SAMScore.cc (modified)
* trunk/yat/statistics/SAMScore.h (modified)
* trunk/yat/statistics/SNRScore.cc (modified)
* trunk/yat/statistics/SNRScore.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/Smoother.cc (modified)
* trunk/yat/statistics/Smoother.h (modified)
* trunk/yat/statistics/VectorFunction.cc (modified)
* trunk/yat/statistics/VectorFunction.h (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.h (modified)
* trunk/yat/statistics/averager_traits.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/tTest.cc (modified)
* trunk/yat/statistics/tTest.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/ColumnStream.cc (modified)
* trunk/yat/utility/ColumnStream.h (modified)
* trunk/yat/utility/CommandLine.cc (modified)
* trunk/yat/utility/CommandLine.h (modified)
* trunk/yat/utility/Container2DIterator.h (modified)
* trunk/yat/utility/DataIterator.h (modified)
* trunk/yat/utility/DataWeight.cc (modified)
* trunk/yat/utility/DataWeight.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/FileUtil.cc (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/Index.cc (modified)
* trunk/yat/utility/Index.h (modified)
* trunk/yat/utility/IteratorPolicy.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/Matrix.cc (modified)
* trunk/yat/utility/Matrix.h (modified)
* trunk/yat/utility/MatrixWeighted.cc (modified)
* trunk/yat/utility/MatrixWeighted.h (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/Option.cc (modified)
* trunk/yat/utility/Option.h (modified)
* trunk/yat/utility/OptionArg.h (modified)
* trunk/yat/utility/OptionFile.cc (modified)
* trunk/yat/utility/OptionFile.h (modified)
* trunk/yat/utility/OptionHelp.cc (modified)
* trunk/yat/utility/OptionHelp.h (modified)
* trunk/yat/utility/OptionInFile.cc (modified)
* trunk/yat/utility/OptionInFile.h (modified)
* trunk/yat/utility/OptionOutFile.cc (modified)
* trunk/yat/utility/OptionOutFile.h (modified)
* trunk/yat/utility/OptionSwitch.cc (modified)
* trunk/yat/utility/OptionSwitch.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/Range.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/SmartPtr.h (modified)
* trunk/yat/utility/StrideIterator.h (modified)
* trunk/yat/utility/TypeInfo.cc (modified)
* trunk/yat/utility/TypeInfo.h (modified)
* trunk/yat/utility/Vector.cc (modified)
* trunk/yat/utility/Vector.h (modified)
* trunk/yat/utility/VectorBase.cc (modified)
* trunk/yat/utility/VectorBase.h (modified)
* trunk/yat/utility/VectorConstView.cc (modified)
* trunk/yat/utility/VectorConstView.h (modified)
* trunk/yat/utility/VectorMutable.cc (modified)
* trunk/yat/utility/VectorMutable.h (modified)
* trunk/yat/utility/VectorView.cc (modified)
* trunk/yat/utility/VectorView.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/WeightIterator.h (modified)
* trunk/yat/utility/iterator_traits.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/stl_utility.cc (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/utility.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/version.cc (modified)
* trunk/yat/utility/version.h.in (modified)
* trunk/yat/utility/yat_assert.h (modified)
Addresses #436. GPL license copy reference should also be updated.
Tue, 09 Sep 2008 21:17:19 GMT Jari Häkkinen [1486]
* trunk/AUTHORS (modified)
* trunk/ChangeLog (modified)
* trunk/Makefile.am (modified)
* trunk/NEWS (modified)
* trunk/README (modified)
* trunk/README.developer (modified)
* trunk/TODO (modified)
* trunk/bootstrap (modified)
* trunk/build_support/version.m4 (modified)
* trunk/build_support/yat-config.in (modified)
* trunk/build_support/yat.am (modified)
* trunk/build_support/yat.m4 (modified)
* trunk/build_support/yat.pc.in (modified)
* trunk/configure.ac (modified)
* trunk/doc/Makefile.am (modified)
* trunk/doc/Statistics.doxygen (modified)
* trunk/doc/build_tool.doxygen (modified)
* trunk/doc/concepts.doxygen (modified)
* trunk/doc/doxygen.config.in (modified)
* trunk/doc/first_page.doxygen.in (modified)
* trunk/doc/namespaces.doxygen (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/README (modified)
* trunk/test/Suite.cc (modified)
* trunk/test/Suite.h (modified)
* trunk/test/alignment_test.cc (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/commandline_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/crossvalidation_test.cc (modified)
* trunk/test/data/Makefile.am (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/data_weight_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/documentation_test.sh.in (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/environment.h.in (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/fileutil_test.cc (modified)
* trunk/test/index_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/iterator_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/knn_test.cc (modified)
* trunk/test/large_file_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/matrix_weighted_test.cc (modified)
* trunk/test/nbc_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/normalization_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/range_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/rnd_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/smart_ptr_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/target_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/utility_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/test/version_test.cc (modified)
* trunk/test/view_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/BootstrapSampler.cc (modified)
* trunk/yat/classifier/BootstrapSampler.h (modified)
* trunk/yat/classifier/ConsensusInputRanker.cc (modified)
* trunk/yat/classifier/ConsensusInputRanker.h (modified)
* trunk/yat/classifier/CrossValidationSampler.cc (modified)
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.cc (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/FeatureSelector.cc (modified)
* trunk/yat/classifier/FeatureSelector.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/FeatureSelectorRandom.cc (modified)
* trunk/yat/classifier/FeatureSelectorRandom.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.cc (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.cc (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/KNN_ReciprocalDistance.cc (modified)
* trunk/yat/classifier/KNN_ReciprocalDistance.h (modified)
* trunk/yat/classifier/KNN_ReciprocalRank.cc (modified)
* trunk/yat/classifier/KNN_ReciprocalRank.h (modified)
* trunk/yat/classifier/KNN_Uniform.cc (modified)
* trunk/yat/classifier/KNN_Uniform.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/KernelLookup.h (modified)
* trunk/yat/classifier/Kernel_MEV.cc (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Sampler.cc (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.cc (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/normalization/Centralizer.h (modified)
* trunk/yat/normalization/ColumnNormalizer.h (modified)
* trunk/yat/normalization/Makefile.am (modified)
* trunk/yat/normalization/QuantileNormalizer.cc (modified)
* trunk/yat/normalization/QuantileNormalizer.h (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AUC.cc (modified)
* trunk/yat/statistics/AUC.h (modified)
* trunk/yat/statistics/Average.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/EuclideanDistance.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/KolmogorovSmirnov.cc (modified)
* trunk/yat/statistics/KolmogorovSmirnov.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/Percentiler.cc (modified)
* trunk/yat/statistics/Percentiler.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SAMScore.cc (modified)
* trunk/yat/statistics/SAMScore.h (modified)
* trunk/yat/statistics/SNRScore.cc (modified)
* trunk/yat/statistics/SNRScore.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/Smoother.cc (modified)
* trunk/yat/statistics/Smoother.h (modified)
* trunk/yat/statistics/VectorFunction.cc (modified)
* trunk/yat/statistics/VectorFunction.h (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.h (modified)
* trunk/yat/statistics/averager_traits.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/tTest.cc (modified)
* trunk/yat/statistics/tTest.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/ColumnStream.cc (modified)
* trunk/yat/utility/ColumnStream.h (modified)
* trunk/yat/utility/CommandLine.cc (modified)
* trunk/yat/utility/CommandLine.h (modified)
* trunk/yat/utility/Container2DIterator.h (modified)
* trunk/yat/utility/DataIterator.h (modified)
* trunk/yat/utility/DataWeight.cc (modified)
* trunk/yat/utility/DataWeight.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/FileUtil.cc (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/Index.cc (modified)
* trunk/yat/utility/Index.h (modified)
* trunk/yat/utility/IteratorPolicy.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/Matrix.cc (modified)
* trunk/yat/utility/Matrix.h (modified)
* trunk/yat/utility/MatrixWeighted.cc (modified)
* trunk/yat/utility/MatrixWeighted.h (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/Option.cc (modified)
* trunk/yat/utility/Option.h (modified)
* trunk/yat/utility/OptionArg.h (modified)
* trunk/yat/utility/OptionFile.cc (modified)
* trunk/yat/utility/OptionFile.h (modified)
* trunk/yat/utility/OptionHelp.cc (modified)
* trunk/yat/utility/OptionHelp.h (modified)
* trunk/yat/utility/OptionInFile.cc (modified)
* trunk/yat/utility/OptionInFile.h (modified)
* trunk/yat/utility/OptionOutFile.cc (modified)
* trunk/yat/utility/OptionOutFile.h (modified)
* trunk/yat/utility/OptionSwitch.cc (modified)
* trunk/yat/utility/OptionSwitch.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/Range.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/SmartPtr.h (modified)
* trunk/yat/utility/StrideIterator.h (modified)
* trunk/yat/utility/TypeInfo.cc (modified)
* trunk/yat/utility/TypeInfo.h (modified)
* trunk/yat/utility/Vector.cc (modified)
* trunk/yat/utility/Vector.h (modified)
* trunk/yat/utility/VectorBase.cc (modified)
* trunk/yat/utility/VectorBase.h (modified)
* trunk/yat/utility/VectorConstView.cc (modified)
* trunk/yat/utility/VectorConstView.h (modified)
* trunk/yat/utility/VectorMutable.cc (modified)
* trunk/yat/utility/VectorMutable.h (modified)
* trunk/yat/utility/VectorView.cc (modified)
* trunk/yat/utility/VectorView.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/WeightIterator.h (modified)
* trunk/yat/utility/iterator_traits.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/stl_utility.cc (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/utility.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/version.cc (modified)
* trunk/yat/utility/version.h.in (modified)
* trunk/yat/utility/yat_assert.h (modified)
Addresses #436.
Wed, 03 Sep 2008 16:50:35 GMT Peter [1473]
* trunk/yat/regression/Local.h (modified)
added some docs about what and when x are thrown in Local
Wed, 03 Sep 2008 16:46:34 GMT Peter [1472]
* trunk/yat/regression/Local.cc (modified)
fitting a Local with no data is impossible so added a throw in that
case
Fri, 29 Aug 2008 19:17:16 GMT Peter [1454]
* trunk/yat/regression/Linear.h (modified)
fixes #429 - the problem was that the implementation had been moved ...
Thu, 28 Aug 2008 20:28:09 GMT Peter [1450]
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
adding reset function in regression::Local
Thu, 28 Aug 2008 15:48:04 GMT Peter [1449]
* trunk/yat/regression/MultiDimensional.h (modified)
docs
Mon, 25 Aug 2008 17:55:00 GMT Peter [1437]
* trunk/.svndigest/config (modified)
* trunk/AUTHORS (modified)
* trunk/ChangeLog (modified)
* trunk/Makefile.am (modified)
* trunk/NEWS (modified)
* trunk/README (modified)
* trunk/TODO (modified)
* trunk/bootstrap (modified)
* trunk/build_support/version.m4 (modified)
* trunk/configure.ac (modified)
* trunk/doc/Makefile.am (modified)
* trunk/doc/Statistics.doxygen (modified)
* trunk/doc/concepts.doxygen (modified)
* trunk/doc/doxygen.config.in (modified)
* trunk/doc/first_page.doxygen (modified)
* trunk/doc/namespaces.doxygen (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/README (modified)
* trunk/test/Suite.cc (modified)
* trunk/test/Suite.h (modified)
* trunk/test/alignment_test.cc (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/commandline_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/crossvalidation_test.cc (modified)
* trunk/test/data/Makefile.am (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/environment.h.in (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/fileutil_test.cc (modified)
* trunk/test/index_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/iterator_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/knn_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/nbc_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/rnd_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/smart_ptr_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/target_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/utility_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/test/view_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/BootstrapSampler.cc (modified)
* trunk/yat/classifier/BootstrapSampler.h (modified)
* trunk/yat/classifier/ConsensusInputRanker.cc (modified)
* trunk/yat/classifier/ConsensusInputRanker.h (modified)
* trunk/yat/classifier/CrossValidationSampler.cc (modified)
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.cc (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/FeatureSelector.cc (modified)
* trunk/yat/classifier/FeatureSelector.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/FeatureSelectorRandom.cc (modified)
* trunk/yat/classifier/FeatureSelectorRandom.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.cc (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.cc (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/KNN_ReciprocalDistance.cc (modified)
* trunk/yat/classifier/KNN_ReciprocalDistance.h (modified)
* trunk/yat/classifier/KNN_ReciprocalRank.cc (modified)
* trunk/yat/classifier/KNN_ReciprocalRank.h (modified)
* trunk/yat/classifier/KNN_Uniform.cc (modified)
* trunk/yat/classifier/KNN_Uniform.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/KernelLookup.h (modified)
* trunk/yat/classifier/Kernel_MEV.cc (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Sampler.cc (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.cc (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AUC.cc (modified)
* trunk/yat/statistics/AUC.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/EuclideanDistance.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/KolmogorovSmirnov.cc (modified)
* trunk/yat/statistics/KolmogorovSmirnov.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SAMScore.cc (modified)
* trunk/yat/statistics/SAMScore.h (modified)
* trunk/yat/statistics/SNRScore.cc (modified)
* trunk/yat/statistics/SNRScore.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/VectorFunction.cc (modified)
* trunk/yat/statistics/VectorFunction.h (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/tTest.cc (modified)
* trunk/yat/statistics/tTest.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/ColumnStream.cc (modified)
* trunk/yat/utility/ColumnStream.h (modified)
* trunk/yat/utility/CommandLine.cc (modified)
* trunk/yat/utility/CommandLine.h (modified)
* trunk/yat/utility/Container2DIterator.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/FileUtil.cc (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/Index.cc (modified)
* trunk/yat/utility/Index.h (modified)
* trunk/yat/utility/IteratorPolicy.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/Matrix.cc (modified)
* trunk/yat/utility/Matrix.h (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/Option.cc (modified)
* trunk/yat/utility/Option.h (modified)
* trunk/yat/utility/OptionArg.h (modified)
* trunk/yat/utility/OptionFile.cc (modified)
* trunk/yat/utility/OptionFile.h (modified)
* trunk/yat/utility/OptionHelp.cc (modified)
* trunk/yat/utility/OptionHelp.h (modified)
* trunk/yat/utility/OptionInFile.cc (modified)
* trunk/yat/utility/OptionInFile.h (modified)
* trunk/yat/utility/OptionOutFile.cc (modified)
* trunk/yat/utility/OptionOutFile.h (modified)
* trunk/yat/utility/OptionSwitch.cc (modified)
* trunk/yat/utility/OptionSwitch.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/SmartPtr.h (modified)
* trunk/yat/utility/StrideIterator.h (modified)
* trunk/yat/utility/TypeInfo.cc (modified)
* trunk/yat/utility/TypeInfo.h (modified)
* trunk/yat/utility/Vector.cc (modified)
* trunk/yat/utility/Vector.h (modified)
* trunk/yat/utility/VectorBase.cc (modified)
* trunk/yat/utility/VectorBase.h (modified)
* trunk/yat/utility/VectorConstView.cc (modified)
* trunk/yat/utility/VectorConstView.h (modified)
* trunk/yat/utility/VectorMutable.cc (modified)
* trunk/yat/utility/VectorMutable.h (modified)
* trunk/yat/utility/VectorView.cc (modified)
* trunk/yat/utility/VectorView.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/iterator_traits.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/stl_utility.cc (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/utility.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/yat_assert.h (modified)
merge patch release 0.4.2 to trunk. Delta 0.4.2-0.4.1
Sat, 24 May 2008 04:00:18 GMT Peter [1324]
* trunk/build_support/ax_boost.m4 (added)
* trunk/build_support/yat.am (added)
* trunk/configure.ac (modified)
* trunk/test/Makefile.am (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/utility/Makefile.am (modified)
Boost is now required (ticket:370). Boost 1.33 is required, which is ...
Thu, 15 May 2008 19:12:17 GMT Peter [1310]
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Smoother.cc (added)
* trunk/yat/statistics/Smoother.h (added)
closes #359
Fri, 11 Apr 2008 06:10:12 GMT Jari Häkkinen [1275]
* trunk/AUTHORS (modified)
* trunk/ChangeLog (modified)
* trunk/Makefile.am (modified)
* trunk/NEWS (modified)
* trunk/README (modified)
* trunk/TODO (modified)
* trunk/bootstrap (modified)
* trunk/configure.ac (modified)
* trunk/doc/Makefile.am (modified)
* trunk/doc/Statistics.doxygen (modified)
* trunk/doc/concepts.doxygen (modified)
* trunk/doc/doxygen.config.in (modified)
* trunk/doc/first_page.doxygen (modified)
* trunk/doc/namespaces.doxygen (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/README (modified)
* trunk/test/alignment_test.cc (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/commandline_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/crossvalidation_test.cc (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/fileutil_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/iterator_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/knn_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/nbc_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/rnd_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/target_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/utility_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/test/view_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/BootstrapSampler.cc (modified)
* trunk/yat/classifier/BootstrapSampler.h (modified)
* trunk/yat/classifier/ConsensusInputRanker.cc (modified)
* trunk/yat/classifier/ConsensusInputRanker.h (modified)
* trunk/yat/classifier/CrossValidationSampler.cc (modified)
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.cc (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/FeatureSelector.cc (modified)
* trunk/yat/classifier/FeatureSelector.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/FeatureSelectorRandom.cc (modified)
* trunk/yat/classifier/FeatureSelectorRandom.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.cc (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.cc (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/KernelLookup.h (modified)
* trunk/yat/classifier/Kernel_MEV.cc (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Sampler.cc (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.cc (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AUC.cc (modified)
* trunk/yat/statistics/AUC.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/EuclideanDistance.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/SAMScore.cc (modified)
* trunk/yat/statistics/SAMScore.h (modified)
* trunk/yat/statistics/SNRScore.cc (modified)
* trunk/yat/statistics/SNRScore.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/VectorFunction.cc (modified)
* trunk/yat/statistics/VectorFunction.h (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/tTest.cc (modified)
* trunk/yat/statistics/tTest.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/ColumnStream.cc (modified)
* trunk/yat/utility/ColumnStream.h (modified)
* trunk/yat/utility/CommandLine.cc (modified)
* trunk/yat/utility/CommandLine.h (modified)
* trunk/yat/utility/Container2DIterator.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/Matrix.cc (modified)
* trunk/yat/utility/Matrix.h (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/Option.cc (modified)
* trunk/yat/utility/Option.h (modified)
* trunk/yat/utility/OptionArg.h (modified)
* trunk/yat/utility/OptionFile.cc (modified)
* trunk/yat/utility/OptionFile.h (modified)
* trunk/yat/utility/OptionHelp.cc (modified)
* trunk/yat/utility/OptionHelp.h (modified)
* trunk/yat/utility/OptionSwitch.cc (modified)
* trunk/yat/utility/OptionSwitch.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/SmartPtr.h (modified)
* trunk/yat/utility/StrideIterator.h (modified)
* trunk/yat/utility/TypeInfo.cc (modified)
* trunk/yat/utility/TypeInfo.h (modified)
* trunk/yat/utility/Vector.cc (modified)
* trunk/yat/utility/Vector.h (modified)
* trunk/yat/utility/VectorBase.cc (modified)
* trunk/yat/utility/VectorBase.h (modified)
* trunk/yat/utility/VectorConstView.cc (modified)
* trunk/yat/utility/VectorConstView.h (modified)
* trunk/yat/utility/VectorMutable.cc (modified)
* trunk/yat/utility/VectorMutable.h (modified)
* trunk/yat/utility/VectorView.cc (modified)
* trunk/yat/utility/VectorView.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/iterator_traits.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/stl_utility.cc (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/utility.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/yat_assert.h (modified)
Updating copyright statements.
Wed, 09 Apr 2008 16:11:07 GMT Peter [1271]
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Matrix.cc (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/SmartPtr.h (modified)
* trunk/yat/utility/Vector.cc (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
replaced u_int with unsigned int or size_t
Fri, 22 Feb 2008 15:29:56 GMT Peter [1121]
* trunk/test/alignment_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/iterator_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/knn_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/nbc_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/smart_ptr_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/view_test.cc (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/Matrix.cc (moved)
* trunk/yat/utility/Matrix.h (moved)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/Vector.cc (modified)
* trunk/yat/utility/VectorBase.cc (modified)
* trunk/yat/utility/VectorConstView.cc (modified)
* trunk/yat/utility/VectorConstView.h (modified)
* trunk/yat/utility/VectorMutable.cc (modified)
* trunk/yat/utility/VectorView.cc (modified)
* trunk/yat/utility/VectorView.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
fixes #308
Thu, 21 Feb 2008 23:18:41 GMT Peter [1120]
* trunk/test/averager_test.cc (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/iterator_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/Vector.cc (moved)
* trunk/yat/utility/Vector.h (moved)
* trunk/yat/utility/VectorBase.cc (modified)
* trunk/yat/utility/VectorBase.h (modified)
* trunk/yat/utility/VectorMutable.h (modified)
* trunk/yat/utility/VectorView.h (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
vector is now Vector
Mon, 18 Feb 2008 03:13:53 GMT Jari Häkkinen [1098]
* trunk/test/alignment_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
Fixes #299. Memory leak in matrix was found and removed.
Thu, 07 Feb 2008 14:50:38 GMT Peter [1049]
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
replaced some cerr outputs with exception throws - refs #189
Wed, 06 Feb 2008 19:30:03 GMT Peter [1043]
* trunk/test/averager_test.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
fixing #128 - iterators in Averger classes
Fri, 01 Feb 2008 18:01:47 GMT Peter [1022]
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
passing VectorBase in regression::MultiDimesionalWeighted - refs #256
Fri, 01 Feb 2008 17:58:38 GMT Peter [1021]
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
passing VectorBase in regression::MultiDimesional - refs #256
Fri, 01 Feb 2008 17:17:26 GMT Peter [1020]
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
passing VectorBase in regression::OneDimesionalWeighted - refs #256
Fri, 01 Feb 2008 17:10:34 GMT Peter [1019]
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
passing VectorBase in regression::OneDimesional - refs #256
Fri, 01 Feb 2008 16:35:32 GMT Peter [1015]
* trunk/test/matrix_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/VectorBase.cc (moved)
* trunk/yat/utility/VectorBase.h (moved)
* trunk/yat/utility/VectorView.cc (moved)
* trunk/yat/utility/VectorView.h (moved)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
changing class names vectorView => VectorView and vectorBase => ...
Fri, 01 Feb 2008 04:15:44 GMT Peter [1009]
* trunk/test/matrix_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
* trunk/yat/utility/vectorBase.cc (copied)
* trunk/yat/utility/vectorBase.h (copied)
* trunk/yat/utility/vectorView.cc (copied)
* trunk/yat/utility/vectorView.h (copied)
merging branch peter-dev into trunk delta 1008:994
Sun, 23 Dec 2007 20:09:15 GMT Jari Häkkinen [1000]
* trunk/.svndigest/config (modified)
* trunk/AUTHORS (modified)
* trunk/ChangeLog (modified)
* trunk/Makefile.am (modified)
* trunk/NEWS (modified)
* trunk/README (modified)
* trunk/TODO (modified)
* trunk/bootstrap (modified)
* trunk/configure.ac (modified)
* trunk/doc/Makefile.am (modified)
* trunk/doc/Statistics.tex (modified)
* trunk/doc/doxygen.config.in (modified)
* trunk/doc/first_page.doxygen (modified)
* trunk/doc/namespaces.doxygen (modified)
* trunk/doc/yat.xcf (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/README (modified)
* trunk/test/alignment_test.cc (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/commandline_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/crossvalidation_test.cc (modified)
* trunk/test/data/Makefile.am (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/fileutil_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/iterator_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/nbc_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/rnd_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/target_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/utility_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/BootstrapSampler.cc (modified)
* trunk/yat/classifier/BootstrapSampler.h (modified)
* trunk/yat/classifier/ConsensusInputRanker.cc (modified)
* trunk/yat/classifier/ConsensusInputRanker.h (modified)
* trunk/yat/classifier/CrossValidationSampler.cc (modified)
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookup2D.cc (modified)
* trunk/yat/classifier/DataLookup2D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.cc (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.cc (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/FeatureSelector.cc (modified)
* trunk/yat/classifier/FeatureSelector.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/FeatureSelectorRandom.cc (modified)
* trunk/yat/classifier/FeatureSelectorRandom.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.cc (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.cc (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/KernelLookup.h (modified)
* trunk/yat/classifier/Kernel_MEV.cc (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Sampler.cc (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.cc (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.cc (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AUC.cc (modified)
* trunk/yat/statistics/AUC.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SAMScore.cc (modified)
* trunk/yat/statistics/SAMScore.h (modified)
* trunk/yat/statistics/SNRScore.cc (modified)
* trunk/yat/statistics/SNRScore.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/VectorFunction.cc (modified)
* trunk/yat/statistics/VectorFunction.h (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/tTest.cc (modified)
* trunk/yat/statistics/tTest.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/ColumnStream.cc (modified)
* trunk/yat/utility/ColumnStream.h (modified)
* trunk/yat/utility/CommandLine.cc (modified)
* trunk/yat/utility/CommandLine.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/FileUtil.cc (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/Iterator.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/Option.cc (modified)
* trunk/yat/utility/Option.h (modified)
* trunk/yat/utility/OptionArg.h (modified)
* trunk/yat/utility/OptionFile.cc (modified)
* trunk/yat/utility/OptionFile.h (modified)
* trunk/yat/utility/OptionHelp.cc (modified)
* trunk/yat/utility/OptionHelp.h (modified)
* trunk/yat/utility/OptionSwitch.cc (modified)
* trunk/yat/utility/OptionSwitch.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/TypeInfo.cc (modified)
* trunk/yat/utility/TypeInfo.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/iterator_traits.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/stl_utility.cc (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/utility.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
* trunk/yat/utility/yat_assert.h (modified)
trac moved to new location.
Sun, 30 Sep 2007 00:50:10 GMT Peter [916]
* trunk/configure.ac (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/knn_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/yat/classifier/DataLookup2D.cc (modified)
* trunk/yat/classifier/DataLookup2D.h (modified)
* trunk/yat/classifier/KNN.h (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/NCC.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/pearson_vector_distance.h (modified)
* trunk/yat/statistics/vector_distance.h (modified)
* trunk/yat/utility/Iterator.h (modified)
* trunk/yat/utility/IteratorTraits.h (modified)
* trunk/yat/utility/IteratorWeighted.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/yat_assert.h (added)
Sorry this commit is a bit to big.
Adding a yat_assert. The yat ...
Mon, 10 Sep 2007 19:41:04 GMT Peter [865]
* trunk/AUTHORS (modified)
* trunk/ChangeLog (modified)
* trunk/Makefile.am (modified)
* trunk/NEWS (modified)
* trunk/README (modified)
* trunk/TODO (modified)
* trunk/bootstrap (modified)
* trunk/configure.ac (modified)
* trunk/doc/Makefile.am (modified)
* trunk/doc/Statistics.tex (modified)
* trunk/doc/doxygen.config.in (modified)
* trunk/doc/first_page.doxygen (modified)
* trunk/doc/namespaces.doxygen (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/README (modified)
* trunk/test/alignment_test.cc (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/crossvalidation_test.cc (modified)
* trunk/test/data/Makefile.am (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/fileutil_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/nbc_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/rnd_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/target_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/utility_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/BootstrapSampler.cc (modified)
* trunk/yat/classifier/BootstrapSampler.h (modified)
* trunk/yat/classifier/ConsensusInputRanker.cc (modified)
* trunk/yat/classifier/ConsensusInputRanker.h (modified)
* trunk/yat/classifier/CrossValidationSampler.cc (modified)
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookup2D.cc (modified)
* trunk/yat/classifier/DataLookup2D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.cc (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.cc (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/FeatureSelector.cc (modified)
* trunk/yat/classifier/FeatureSelector.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/FeatureSelectorRandom.cc (modified)
* trunk/yat/classifier/FeatureSelectorRandom.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.cc (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IGP.cc (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.cc (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/KernelLookup.h (modified)
* trunk/yat/classifier/Kernel_MEV.cc (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.cc (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Sampler.cc (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.cc (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.cc (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AUC.cc (modified)
* trunk/yat/statistics/AUC.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/Distance.cc (modified)
* trunk/yat/statistics/Distance.h (modified)
* trunk/yat/statistics/Euclidean.cc (modified)
* trunk/yat/statistics/Euclidean.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/PearsonDistance.cc (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SAMScore.cc (modified)
* trunk/yat/statistics/SAMScore.h (modified)
* trunk/yat/statistics/SNRScore.cc (modified)
* trunk/yat/statistics/SNRScore.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/VectorFunction.cc (modified)
* trunk/yat/statistics/VectorFunction.h (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/tTest.cc (modified)
* trunk/yat/statistics/tTest.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/FileUtil.cc (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/TypeInfo.cc (modified)
* trunk/yat/utility/TypeInfo.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/stl_utility.cc (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/utility.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
changing URL to http://trac.thep.lu.se/trac/yat
Sun, 08 Apr 2007 22:09:58 GMT Jari Häkkinen [833]
* trunk/configure.ac (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/data/Makefile.am (added)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/utility/Makefile.am (modified)
Addresses #217. Fixed so that 'make distcheck' compiles but tests ...
Tue, 27 Mar 2007 13:22:09 GMT Peter [831]
* trunk/ChangeLog (modified)
* trunk/Makefile.am (modified)
* trunk/NEWS (modified)
* trunk/README (modified)
* trunk/TODO (modified)
* trunk/bootstrap (modified)
* trunk/configure.ac (modified)
* trunk/doc/Makefile.am (modified)
* trunk/doc/Statistics.tex (modified)
* trunk/doc/doxygen.config.in (modified)
* trunk/doc/first_page.doxygen (modified)
* trunk/doc/namespaces.doxygen (modified)
* trunk/test/Makefile.am (modified)
* trunk/test/README (modified)
* trunk/test/alignment_test.cc (modified)
* trunk/test/averager_test.cc (modified)
* trunk/test/consensus_inputranker_test.cc (modified)
* trunk/test/crossvalidation_test.cc (modified)
* trunk/test/data_lookup_1d_test.cc (modified)
* trunk/test/distance_test.cc (modified)
* trunk/test/ensemble_test.cc (modified)
* trunk/test/feature_selection_test.cc (modified)
* trunk/test/fileutil_test.cc (modified)
* trunk/test/inputranker_test.cc (modified)
* trunk/test/kernel_lookup_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/matrix_lookup_test.cc (modified)
* trunk/test/matrix_test.cc (modified)
* trunk/test/ncc_test.cc (modified)
* trunk/test/nni_test.cc (modified)
* trunk/test/pca_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/rnd_test.cc (modified)
* trunk/test/roc_test.cc (modified)
* trunk/test/score_test.cc (modified)
* trunk/test/statistics_test.cc (modified)
* trunk/test/subset_generator_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/test/target_test.cc (modified)
* trunk/test/ttest_test.cc (modified)
* trunk/test/utility_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/classifier/ConsensusInputRanker.cc (modified)
* trunk/yat/classifier/ConsensusInputRanker.h (modified)
* trunk/yat/classifier/CrossValidationSampler.cc (modified)
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookup2D.cc (modified)
* trunk/yat/classifier/DataLookup2D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.cc (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.cc (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/FeatureSelector.cc (modified)
* trunk/yat/classifier/FeatureSelector.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/FeatureSelectorRandom.cc (modified)
* trunk/yat/classifier/FeatureSelectorRandom.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.cc (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IGP.cc (modified)
* trunk/yat/classifier/IGP.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.cc (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/KernelLookup.h (modified)
* trunk/yat/classifier/Kernel_MEV.cc (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/Kernel_SEV.h (modified)
* trunk/yat/classifier/Makefile.am (modified)
* trunk/yat/classifier/MatrixLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.cc (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.cc (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.cc (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/classifier/SVindex.cc (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Sampler.cc (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.cc (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.cc (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.cc (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/classifier/utility.h (modified)
* trunk/yat/random/Makefile.am (modified)
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AUC.cc (modified)
* trunk/yat/statistics/AUC.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/Distance.cc (modified)
* trunk/yat/statistics/Distance.h (modified)
* trunk/yat/statistics/Euclidean.cc (modified)
* trunk/yat/statistics/Euclidean.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/Makefile.am (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonCorrelation.cc (modified)
* trunk/yat/statistics/PearsonCorrelation.h (modified)
* trunk/yat/statistics/PearsonDistance.cc (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SAMScore.cc (modified)
* trunk/yat/statistics/SAMScore.h (modified)
* trunk/yat/statistics/SNR.cc (modified)
* trunk/yat/statistics/SNR.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/VectorFunction.cc (modified)
* trunk/yat/statistics/VectorFunction.h (modified)
* trunk/yat/statistics/WilcoxonFoldChange.cc (modified)
* trunk/yat/statistics/WilcoxonFoldChange.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/tTest.cc (modified)
* trunk/yat/statistics/tTest.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/Alignment.cc (modified)
* trunk/yat/utility/Alignment.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/FileUtil.cc (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/Makefile.am (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/stl_utility.cc (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/utility.cc (modified)
* trunk/yat/utility/utility.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
Refs #185.
Sun, 11 Mar 2007 00:14:24 GMT Jari Häkkinen [792]
* trunk/test/alignment_test.cc (modified)
* trunk/test/kernel_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/yat/classifier/Kernel_SEV.cc (modified)
* trunk/yat/classifier/NCC.cc (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
Addresses #193. matrix now works as outlined in the ticket ...
Sat, 10 Mar 2007 20:07:13 GMT Jari Häkkinen [789]
* trunk/test/matrix_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/vector_test.cc (modified)
* trunk/yat/classifier/IGP.cc (modified)
* trunk/yat/classifier/NCC.cc (modified)
* trunk/yat/classifier/utility.cc (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
Addresses #193. vector now works as outlined here. Added some ...
Thu, 22 Feb 2007 15:14:40 GMT Peter [767]
* trunk/yat/classifier/CrossValidationSampler.h (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/EnsembleBuilder.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/IRRank.h (modified)
* trunk/yat/classifier/IRRetrieve.h (modified)
* trunk/yat/classifier/InputRanker.h (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/KernelFunction.h (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/NBC.cc (modified)
* trunk/yat/classifier/NBC.h (modified)
* trunk/yat/classifier/NCC.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/Sampler.h (modified)
* trunk/yat/classifier/SubsetGenerator.h (modified)
* trunk/yat/classifier/SupervisedClassifier.h (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Kernel.h (modified)
* trunk/yat/regression/KernelBox.cc (modified)
* trunk/yat/regression/KernelBox.h (modified)
* trunk/yat/regression/KernelTriCube.cc (modified)
* trunk/yat/regression/KernelTriCube.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/Distance.h (modified)
* trunk/yat/statistics/FoldChange.h (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/utility/FileUtil.h (modified)
* trunk/yat/utility/NNI.h (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/kNNI.h (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/vector.h (modified)
Fixes #65
Mon, 19 Feb 2007 19:41:25 GMT Jari Häkkinen [759]
* trunk/test/nni_test.cc (modified)
* trunk/test/regression_test.cc (modified)
* trunk/test/svd_test.cc (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/utility/WeNNI.cc (modified)
* trunk/yat/utility/kNNI.cc (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
Fixes #171 and addresses #2. A few more GSL_error exceptions. Removed ...
Mon, 19 Feb 2007 18:51:31 GMT Jari Häkkinen [757]
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/KernelLookup.cc (modified)
* trunk/yat/classifier/MatrixLookup.h (modified)
* trunk/yat/classifier/MatrixLookupWeighted.h (modified)
* trunk/yat/classifier/SVindex.h (modified)
* trunk/yat/classifier/Target.h (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/utility.h (modified)
Fixed #include statemenst and forward declarations. asserts in ...
Sat, 17 Feb 2007 12:25:36 GMT Jari Häkkinen [751]
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
Addresses #2. Continued adding GSL_error exceptions.
Sat, 17 Feb 2007 10:56:29 GMT Jari Häkkinen [750]
* trunk/yat/random/random.cc (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/utility/Exception.h (modified)
Addresses #2. Continued adding GSL_error exceptions.
Sun, 11 Feb 2007 13:26:41 GMT Peter [747]
* trunk/test/score_test.cc (modified)
* trunk/test/svm_test.cc (modified)
* trunk/yat/classifier/DataLookup1D.h (modified)
* trunk/yat/classifier/DataLookupWeighted1D.h (modified)
* trunk/yat/classifier/FeatureSelectorIR.cc (modified)
* trunk/yat/classifier/FeatureSelectorIR.h (modified)
* trunk/yat/classifier/GaussianKernelFunction.h (modified)
* trunk/yat/classifier/Kernel.cc (modified)
* trunk/yat/classifier/Kernel.h (modified)
* trunk/yat/classifier/Kernel_MEV.h (modified)
* trunk/yat/classifier/PolynomialKernelFunction.h (modified)
* trunk/yat/classifier/SVM.cc (modified)
* trunk/yat/classifier/SVM.h (modified)
* trunk/yat/microarray/DataSet.h (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/FoldChange.cc (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SNR.cc (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/tScore.cc (modified)
replaced includes in header files with forward declarations when ...
Sat, 13 Jan 2007 21:14:05 GMT Peter [742]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
added test that LinearWeighte is equal to PolynomialWeighted(1) fixes ...
Sat, 13 Jan 2007 14:41:40 GMT Peter [741]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
fixes #161 and #164
Fri, 12 Jan 2007 15:17:22 GMT Peter [740]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
added more test in MultiDimWeighted and moved some stuff to be ...
Fri, 12 Jan 2007 12:14:21 GMT Peter [739]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
fixes #178 and removes a bug in MultiDimensional
Sat, 06 Jan 2007 16:06:19 GMT Peter [731]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
added test for multidimensional weighted and straight version
Sat, 06 Jan 2007 11:02:21 GMT Peter [730]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
fixes #167 and #160
Fri, 05 Jan 2007 16:00:15 GMT Peter [729]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Makefile.am (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.cc (added)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
Fixes #159. Also removed some inlines in OneDimensionalWeighted by ...
Thu, 04 Jan 2007 16:07:16 GMT Peter [728]
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
added virtual function s2 in OneDimensional.
Thu, 04 Jan 2007 15:06:14 GMT Peter [727]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
fixes #177
Thu, 04 Jan 2007 14:38:56 GMT Peter [726]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
fixes #165 added test checking Linear Regression is equivalent to ...
Mon, 01 Jan 2007 16:12:32 GMT Jari Häkkinen [724]
* trunk/test/score_test.cc (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
Removed redundant #includes.
Tue, 26 Dec 2006 09:56:26 GMT Jari Häkkinen [718]
* trunk/yat/random/random.cc (modified)
* trunk/yat/random/random.h (modified)
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/Fisher.cc (modified)
* trunk/yat/statistics/Fisher.h (modified)
* trunk/yat/statistics/Histogram.cc (modified)
* trunk/yat/statistics/Histogram.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/CommandLine.cc (modified)
* trunk/yat/utility/CommandLine.h (modified)
* trunk/yat/utility/Exception.h (modified)
* trunk/yat/utility/NNI.cc (modified)
* trunk/yat/utility/NNI.h (modified)
Addresses #170.
Thu, 21 Dec 2006 14:43:31 GMT Peter [713]
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
Fixes #77, #78, #158, and #163, and refs #81
Mon, 18 Dec 2006 00:47:44 GMT Jari Häkkinen [703]
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Local.cc (modified)
* trunk/yat/regression/Local.h (modified)
* trunk/yat/regression/MultiDimensional.cc (modified)
* trunk/yat/regression/MultiDimensional.h (modified)
* trunk/yat/regression/MultiDimensionalWeighted.cc (modified)
* trunk/yat/regression/MultiDimensionalWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.cc (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
* trunk/yat/statistics/Averager.cc (modified)
* trunk/yat/statistics/Averager.h (modified)
* trunk/yat/statistics/AveragerPair.cc (modified)
* trunk/yat/statistics/AveragerPair.h (modified)
* trunk/yat/statistics/AveragerPairWeighted.cc (modified)
* trunk/yat/statistics/AveragerPairWeighted.h (modified)
* trunk/yat/statistics/AveragerWeighted.cc (modified)
* trunk/yat/statistics/AveragerWeighted.h (modified)
* trunk/yat/statistics/Distance.cc (modified)
* trunk/yat/statistics/Distance.h (modified)
* trunk/yat/statistics/Pearson.cc (modified)
* trunk/yat/statistics/Pearson.h (modified)
* trunk/yat/statistics/PearsonDistance.cc (modified)
* trunk/yat/statistics/PearsonDistance.h (modified)
* trunk/yat/statistics/ROC.cc (modified)
* trunk/yat/statistics/ROC.h (modified)
* trunk/yat/statistics/SNR.h (modified)
* trunk/yat/statistics/Score.cc (modified)
* trunk/yat/statistics/Score.h (modified)
* trunk/yat/statistics/tScore.h (modified)
* trunk/yat/statistics/utility.cc (modified)
* trunk/yat/statistics/utility.h (modified)
* trunk/yat/utility/CommandLine.h (modified)
* trunk/yat/utility/PCA.cc (modified)
* trunk/yat/utility/PCA.h (modified)
* trunk/yat/utility/SVD.cc (modified)
* trunk/yat/utility/SVD.h (modified)
* trunk/yat/utility/WeNNI.h (modified)
* trunk/yat/utility/matrix.cc (modified)
* trunk/yat/utility/matrix.h (modified)
* trunk/yat/utility/stl_utility.h (modified)
* trunk/yat/utility/vector.cc (modified)
* trunk/yat/utility/vector.h (modified)
Addresses #65 and #170.
Thu, 26 Oct 2006 14:04:35 GMT Peter [702]
* trunk/test/regression_test.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/LinearWeighted.cc (modified)
* trunk/yat/regression/LinearWeighted.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/NaiveWeighted.cc (modified)
* trunk/yat/regression/NaiveWeighted.h (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
* trunk/yat/regression/Polynomial.h (modified)
* trunk/yat/regression/PolynomialWeighted.h (modified)
Refs #81 moved mse_ to inherited classes and made mse() pure virtual ...
Thu, 26 Oct 2006 00:39:54 GMT Peter [698]
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/OneDimensional.h (modified)
changed variable msd to mse. refs #81
Wed, 25 Oct 2006 10:33:29 GMT Peter [697]
* trunk/yat/regression/Linear.cc (modified)
* trunk/yat/regression/Linear.h (modified)
* trunk/yat/regression/Naive.cc (modified)
* trunk/yat/regression/Naive.h (modified)
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/Polynomial.cc (modified)
* trunk/yat/regression/Polynomial.h (modified)
added features to Regression::OneDimensional and moved thing not ...
Wed, 25 Oct 2006 10:13:37 GMT Peter [696]
* trunk/yat/regression/OneDimensional.h (modified)
* trunk/yat/regression/OneDimensionalWeighted.h (modified)
added msd function in regression
Wed, 25 Oct 2006 09:20:17 GMT Peter [695]
* trunk/yat/regression/OneDimensional.h (modified)
References #81 improved documentation
Wed, 11 Oct 2006 22:06:38 GMT Jari Häkkinen [682]
* trunk/configure.ac (modified)
* trunk/test/regression_test.cc (modified)
* trunk/yat/Makefile.am (modified)
* trunk/yat/regression (added)
* trunk/yat/regression/Kernel.h (moved)
* trunk/yat/regression/KernelBox.cc (moved)
* trunk/yat/regression/KernelBox.h (moved)
* trunk/yat/regression/KernelTriCube.cc (moved)
* trunk/yat/regression/KernelTriCube.h (moved)
* trunk/yat/regression/Linear.cc (moved)
* trunk/yat/regression/Linear.h (moved)
* trunk/yat/regression/LinearWeighted.cc (moved)
* trunk/yat/regression/LinearWeighted.h (moved)
* trunk/yat/regression/Local.cc (moved)
* trunk/yat/regression/Local.h (moved)
* trunk/yat/regression/Makefile.am (added)
* trunk/yat/regression/MultiDimensional.cc (moved)
* trunk/yat/regression/MultiDimensional.h (moved)
* trunk/yat/regression/MultiDimensionalWeighted.cc (moved)
* trunk/yat/regression/MultiDimensionalWeighted.h (moved)
* trunk/yat/regression/Naive.cc (moved)
* trunk/yat/regression/Naive.h (moved)
* trunk/yat/regression/NaiveWeighted.cc (moved)
* trunk/yat/regression/NaiveWeighted.h (moved)
* trunk/yat/regression/OneDimensional.cc (moved)
* trunk/yat/regression/OneDimensional.h (moved)
* trunk/yat/regression/OneDimensionalWeighted.h (moved)
* trunk/yat/regression/Polynomial.cc (moved)
* trunk/yat/regression/Polynomial.h (moved)
* trunk/yat/regression/PolynomialWeighted.cc (moved)
* trunk/yat/regression/PolynomialWeighted.h (moved)
* trunk/yat/statistics/Makefile.am (modified)
Addresses #153. Moved regression files to .../yat/regression.