# # ChangeLog for trunk/yat/utility/config_public.h.in # # Generated by Trac 1.2.3 # May 22, 2022, 8:07:13 PM Sat, 19 Dec 2009 22:43:03 GMT Peter [2124] * trunk/yat/utility/config_public.h.in (modified) * trunk/yat/utility/deprecate.h (modified) * trunk/yat/utility/version.h.in (modified) updating url to dev.thep i couple of stray places Sat, 12 Dec 2009 23:11:43 GMT Peter [2119] * trunk/.svndigest/config (modified) * trunk/AUTHORS (modified) * trunk/ChangeLog (modified) * trunk/Makefile.am (modified) * trunk/NEWS (modified) * trunk/README (modified) * trunk/README.developer (modified) * trunk/TODO (modified) * trunk/build_support/yat-config.in (modified) * trunk/build_support/yat.pc.in (modified) * trunk/configure.ac (modified) * trunk/doc/Makefile.am (modified) * trunk/doc/Statistics.doxygen (modified) * trunk/doc/build_tool.doxygen (modified) * trunk/doc/concepts.doxygen (modified) * trunk/doc/doxygen.config.in (modified) * trunk/doc/first_page.doxygen.in (modified) * trunk/doc/namespaces.doxygen (modified) * trunk/m4/version.m4 (modified) * trunk/m4/yat.m4 (modified) * trunk/test/Makefile.am (modified) * trunk/test/README (modified) * trunk/test/Suite.cc (modified) * trunk/test/Suite.h (modified) * trunk/test/alignment_test.cc (modified) * trunk/test/averager_test.cc (modified) * trunk/test/commandline_test.cc (modified) * trunk/test/consensus_inputranker_test.cc (modified) * trunk/test/crossvalidation_test.cc (modified) * trunk/test/data/Makefile.am (modified) * trunk/test/data_lookup_1d_test.cc (modified) * trunk/test/data_weight_test.cc (modified) * trunk/test/distance_test.cc (modified) * trunk/test/documentation_test.sh.in (modified) * trunk/test/ensemble_test.cc (modified) * trunk/test/environment.h.in (modified) * trunk/test/feature_selection_test.cc (modified) * trunk/test/fileutil_test.cc (modified) * trunk/test/index_test.cc (modified) * trunk/test/inputranker_test.cc (modified) * trunk/test/interpolation_test.cc (modified) * trunk/test/iterator_test.cc (modified) * trunk/test/kernel_lookup_test.cc (modified) * trunk/test/kernel_test.cc (modified) * trunk/test/knn_test.cc (modified) * trunk/test/large_file_test.cc (modified) * trunk/test/matrix_lookup_test.cc (modified) * trunk/test/matrix_test.cc (modified) * trunk/test/matrix_weighted_test.cc (modified) * trunk/test/nbc_test.cc (modified) * trunk/test/ncc_test.cc (modified) * trunk/test/nni_test.cc (modified) * trunk/test/normalization_test.cc (modified) * trunk/test/pca_test.cc (modified) * trunk/test/range_test.cc (modified) * trunk/test/regression_test.cc (modified) * trunk/test/rnd_test.cc (modified) * trunk/test/roc_test.cc (modified) * trunk/test/score_test.cc (modified) * trunk/test/smart_ptr_test.cc (modified) * trunk/test/statistics_test.cc (modified) * trunk/test/subset_generator_test.cc (modified) * trunk/test/svd_test.cc (modified) * trunk/test/svm_test.cc (modified) * trunk/test/target_test.cc (modified) * trunk/test/ttest_test.cc (modified) * trunk/test/utility_test.cc (modified) * trunk/test/vector_test.cc (modified) * trunk/test/version_test.cc (modified) * trunk/test/view_test.cc (modified) * trunk/yat/Makefile.am (modified) * trunk/yat/classifier/BootstrapSampler.cc (modified) * trunk/yat/classifier/BootstrapSampler.h (modified) * trunk/yat/classifier/ConsensusInputRanker.cc (modified) * trunk/yat/classifier/ConsensusInputRanker.h (modified) * trunk/yat/classifier/CrossValidationSampler.cc (modified) * trunk/yat/classifier/CrossValidationSampler.h (modified) * trunk/yat/classifier/DataLookup1D.cc (modified) * trunk/yat/classifier/DataLookup1D.h (modified) * trunk/yat/classifier/DataLookupWeighted1D.cc (modified) * trunk/yat/classifier/DataLookupWeighted1D.h (modified) * trunk/yat/classifier/EnsembleBuilder.h (modified) * trunk/yat/classifier/FeatureSelector.cc (modified) * trunk/yat/classifier/FeatureSelector.h (modified) * trunk/yat/classifier/FeatureSelectorIR.cc (modified) * trunk/yat/classifier/FeatureSelectorIR.h (modified) * trunk/yat/classifier/FeatureSelectorRandom.cc (modified) * trunk/yat/classifier/FeatureSelectorRandom.h (modified) * trunk/yat/classifier/GaussianKernelFunction.cc (modified) * trunk/yat/classifier/GaussianKernelFunction.h (modified) * trunk/yat/classifier/IGP.h (modified) * trunk/yat/classifier/IRRank.h (modified) * trunk/yat/classifier/IRRetrieve.h (modified) * trunk/yat/classifier/InputRanker.cc (modified) * trunk/yat/classifier/InputRanker.h (modified) * trunk/yat/classifier/KNN.h (modified) * trunk/yat/classifier/KNN_ReciprocalDistance.cc (modified) * trunk/yat/classifier/KNN_ReciprocalDistance.h (modified) * trunk/yat/classifier/KNN_ReciprocalRank.cc (modified) * trunk/yat/classifier/KNN_ReciprocalRank.h (modified) * trunk/yat/classifier/KNN_Uniform.cc (modified) * trunk/yat/classifier/KNN_Uniform.h (modified) * trunk/yat/classifier/Kernel.cc (modified) * trunk/yat/classifier/Kernel.h (modified) * trunk/yat/classifier/KernelFunction.h (modified) * trunk/yat/classifier/KernelLookup.cc (modified) * trunk/yat/classifier/KernelLookup.h (modified) * trunk/yat/classifier/Kernel_MEV.cc (modified) * trunk/yat/classifier/Kernel_MEV.h (modified) * trunk/yat/classifier/Kernel_SEV.cc (modified) * trunk/yat/classifier/Kernel_SEV.h (modified) * trunk/yat/classifier/Makefile.am (modified) * trunk/yat/classifier/MatrixLookup.cc (modified) * trunk/yat/classifier/MatrixLookup.h (modified) * trunk/yat/classifier/MatrixLookupWeighted.cc (modified) * trunk/yat/classifier/MatrixLookupWeighted.h (modified) * trunk/yat/classifier/NBC.cc (modified) * trunk/yat/classifier/NBC.h (modified) * trunk/yat/classifier/NCC.h (modified) * trunk/yat/classifier/PolynomialKernelFunction.cc (modified) * trunk/yat/classifier/PolynomialKernelFunction.h (modified) * trunk/yat/classifier/SVM.cc (modified) * trunk/yat/classifier/SVM.h (modified) * trunk/yat/classifier/SVindex.cc (modified) * trunk/yat/classifier/SVindex.h (modified) * trunk/yat/classifier/Sampler.cc (modified) * trunk/yat/classifier/Sampler.h (modified) * trunk/yat/classifier/SubsetGenerator.h (modified) * trunk/yat/classifier/SupervisedClassifier.cc (modified) * trunk/yat/classifier/SupervisedClassifier.h (modified) * trunk/yat/classifier/Target.cc (modified) * trunk/yat/classifier/Target.h (modified) * trunk/yat/classifier/utility.cc (modified) * trunk/yat/classifier/utility.h (modified) * trunk/yat/normalizer/Centralizer.h (modified) * trunk/yat/normalizer/ColumnNormalizer.h (modified) * trunk/yat/normalizer/Gauss.h (modified) * trunk/yat/normalizer/Makefile.am (modified) * trunk/yat/normalizer/QuantileNormalizer.cc (modified) * trunk/yat/normalizer/QuantileNormalizer.h (modified) * trunk/yat/normalizer/RowNormalizer.h (modified) * trunk/yat/normalizer/Spearman.h (modified) * trunk/yat/normalizer/Zscore.h (modified) * trunk/yat/normalizer/qQuantileNormalizer.cc (modified) * trunk/yat/normalizer/qQuantileNormalizer.h (modified) * trunk/yat/random/Makefile.am (modified) * trunk/yat/random/random.cc (modified) * trunk/yat/random/random.h (modified) * trunk/yat/regression/AkimaInterpolation.cc (modified) * trunk/yat/regression/AkimaInterpolation.h (modified) * trunk/yat/regression/AkimaPeriodicInterpolation.cc (modified) * trunk/yat/regression/AkimaPeriodicInterpolation.h (modified) * trunk/yat/regression/CSplineInterpolation.cc (modified) * trunk/yat/regression/CSplineInterpolation.h (modified) * trunk/yat/regression/CSplinePeriodicInterpolation.cc (modified) * trunk/yat/regression/CSplinePeriodicInterpolation.h (modified) * trunk/yat/regression/GSLInterpolation.cc (modified) * trunk/yat/regression/GSLInterpolation.h (modified) * trunk/yat/regression/Kernel.h (modified) * trunk/yat/regression/KernelBox.cc (modified) * trunk/yat/regression/KernelBox.h (modified) * trunk/yat/regression/KernelTriCube.cc (modified) * trunk/yat/regression/KernelTriCube.h (modified) * trunk/yat/regression/Linear.cc (modified) * trunk/yat/regression/Linear.h (modified) * trunk/yat/regression/LinearInterpolation.cc (modified) * trunk/yat/regression/LinearInterpolation.h (modified) * trunk/yat/regression/LinearWeighted.cc (modified) * trunk/yat/regression/LinearWeighted.h (modified) * trunk/yat/regression/Local.cc (modified) * trunk/yat/regression/Local.h (modified) * trunk/yat/regression/Makefile.am (modified) * trunk/yat/regression/MultiDimensional.cc (modified) * trunk/yat/regression/MultiDimensional.h (modified) * trunk/yat/regression/MultiDimensionalWeighted.cc (modified) * trunk/yat/regression/MultiDimensionalWeighted.h (modified) * trunk/yat/regression/Naive.cc (modified) * trunk/yat/regression/Naive.h (modified) * trunk/yat/regression/NaiveWeighted.cc (modified) * trunk/yat/regression/NaiveWeighted.h (modified) * trunk/yat/regression/OneDimensional.cc (modified) * trunk/yat/regression/OneDimensional.h (modified) * trunk/yat/regression/OneDimensionalWeighted.cc (modified) * trunk/yat/regression/OneDimensionalWeighted.h (modified) * trunk/yat/regression/Polynomial.cc (modified) * trunk/yat/regression/Polynomial.h (modified) * trunk/yat/regression/PolynomialInterpolation.cc (modified) * trunk/yat/regression/PolynomialInterpolation.h (modified) * trunk/yat/regression/PolynomialWeighted.cc (modified) * trunk/yat/regression/PolynomialWeighted.h (modified) * trunk/yat/statistics/AUC.cc (modified) * trunk/yat/statistics/AUC.h (modified) * trunk/yat/statistics/Average.h (modified) * trunk/yat/statistics/Averager.cc (modified) * trunk/yat/statistics/Averager.h (modified) * trunk/yat/statistics/AveragerPair.cc (modified) * trunk/yat/statistics/AveragerPair.h (modified) * trunk/yat/statistics/AveragerPairWeighted.cc (modified) * trunk/yat/statistics/AveragerPairWeighted.h (modified) * trunk/yat/statistics/AveragerWeighted.cc (modified) * trunk/yat/statistics/AveragerWeighted.h (modified) * trunk/yat/statistics/EuclideanDistance.h (modified) * trunk/yat/statistics/Fisher.cc (modified) * trunk/yat/statistics/Fisher.h (modified) * trunk/yat/statistics/FoldChange.cc (modified) * trunk/yat/statistics/FoldChange.h (modified) * trunk/yat/statistics/Histogram.cc (modified) * trunk/yat/statistics/Histogram.h (modified) * trunk/yat/statistics/KolmogorovSmirnov.cc (modified) * trunk/yat/statistics/KolmogorovSmirnov.h (modified) * trunk/yat/statistics/Makefile.am (modified) * trunk/yat/statistics/Pearson.cc (modified) * trunk/yat/statistics/Pearson.h (modified) * trunk/yat/statistics/PearsonCorrelation.cc (modified) * trunk/yat/statistics/PearsonCorrelation.h (modified) * trunk/yat/statistics/PearsonDistance.h (modified) * trunk/yat/statistics/Percentiler.cc (modified) * trunk/yat/statistics/Percentiler.h (modified) * trunk/yat/statistics/ROC.cc (modified) * trunk/yat/statistics/ROC.h (modified) * trunk/yat/statistics/SAMScore.cc (modified) * trunk/yat/statistics/SAMScore.h (modified) * trunk/yat/statistics/SNRScore.cc (modified) * trunk/yat/statistics/SNRScore.h (modified) * trunk/yat/statistics/Score.cc (modified) * trunk/yat/statistics/Score.h (modified) * trunk/yat/statistics/Smoother.cc (modified) * trunk/yat/statistics/Smoother.h (modified) * trunk/yat/statistics/VectorFunction.cc (modified) * trunk/yat/statistics/VectorFunction.h (modified) * trunk/yat/statistics/WilcoxonFoldChange.cc (modified) * trunk/yat/statistics/WilcoxonFoldChange.h (modified) * trunk/yat/statistics/averager_traits.h (modified) * trunk/yat/statistics/tScore.cc (modified) * trunk/yat/statistics/tScore.h (modified) * trunk/yat/statistics/tTest.cc (modified) * trunk/yat/statistics/tTest.h (modified) * trunk/yat/statistics/utility.cc (modified) * trunk/yat/statistics/utility.h (modified) * trunk/yat/utility/Alignment.cc (modified) * trunk/yat/utility/Alignment.h (modified) * trunk/yat/utility/ColumnStream.cc (modified) * trunk/yat/utility/ColumnStream.h (modified) * trunk/yat/utility/CommandLine.cc (modified) * trunk/yat/utility/CommandLine.h (modified) * trunk/yat/utility/Container2DIterator.h (modified) * trunk/yat/utility/DataIterator.h (modified) * trunk/yat/utility/DataWeight.cc (modified) * trunk/yat/utility/DataWeight.h (modified) * trunk/yat/utility/DataWeightProxy.h (modified) * trunk/yat/utility/Exception.h (modified) * trunk/yat/utility/FileUtil.cc (modified) * trunk/yat/utility/FileUtil.h (modified) * trunk/yat/utility/Index.cc (modified) * trunk/yat/utility/Index.h (modified) * trunk/yat/utility/Makefile.am (modified) * trunk/yat/utility/Matrix.cc (modified) * trunk/yat/utility/Matrix.h (modified) * trunk/yat/utility/MatrixWeighted.cc (modified) * trunk/yat/utility/MatrixWeighted.h (modified) * trunk/yat/utility/NNI.cc (modified) * trunk/yat/utility/NNI.h (modified) * trunk/yat/utility/Option.cc (modified) * trunk/yat/utility/Option.h (modified) * trunk/yat/utility/OptionArg.h (modified) * trunk/yat/utility/OptionFile.cc (modified) * trunk/yat/utility/OptionFile.h (modified) * trunk/yat/utility/OptionHelp.cc (modified) * trunk/yat/utility/OptionHelp.h (modified) * trunk/yat/utility/OptionInFile.cc (modified) * trunk/yat/utility/OptionInFile.h (modified) * trunk/yat/utility/OptionOutFile.cc (modified) * trunk/yat/utility/OptionOutFile.h (modified) * trunk/yat/utility/OptionSwitch.cc (modified) * trunk/yat/utility/OptionSwitch.h (modified) * trunk/yat/utility/PCA.cc (modified) * trunk/yat/utility/PCA.h (modified) * trunk/yat/utility/Range.h (modified) * trunk/yat/utility/SVD.cc (modified) * trunk/yat/utility/SVD.h (modified) * trunk/yat/utility/SmartPtr.h (modified) * trunk/yat/utility/StrideIterator.h (modified) * trunk/yat/utility/TypeInfo.cc (modified) * trunk/yat/utility/TypeInfo.h (modified) * trunk/yat/utility/Vector.cc (modified) * trunk/yat/utility/Vector.h (modified) * trunk/yat/utility/VectorBase.cc (modified) * trunk/yat/utility/VectorBase.h (modified) * trunk/yat/utility/VectorConstView.cc (modified) * trunk/yat/utility/VectorConstView.h (modified) * trunk/yat/utility/VectorMutable.cc (modified) * trunk/yat/utility/VectorMutable.h (modified) * trunk/yat/utility/VectorView.cc (modified) * trunk/yat/utility/VectorView.h (modified) * trunk/yat/utility/WeNNI.cc (modified) * trunk/yat/utility/WeNNI.h (modified) * trunk/yat/utility/WeightIterator.h (modified) * trunk/yat/utility/config_public.h.in (modified) * trunk/yat/utility/iterator_traits.h (modified) * trunk/yat/utility/kNNI.cc (modified) * trunk/yat/utility/kNNI.h (modified) * trunk/yat/utility/stl_utility.cc (modified) * trunk/yat/utility/stl_utility.h (modified) * trunk/yat/utility/utility.cc (modified) * trunk/yat/utility/utility.h (modified) * trunk/yat/utility/version.cc (modified) * trunk/yat/utility/version.h.in (modified) * trunk/yat/utility/yat_assert.h (modified) converted files to utf-8. fixes #577 Thu, 12 Feb 2009 18:07:10 GMT Peter [1797] * trunk/Makefile.am (modified) * trunk/README.developer (modified) * trunk/TODO (modified) * trunk/bootstrap (modified) * trunk/build_support/yat-config.in (modified) * trunk/build_support/yat.pc.in (modified) * trunk/configure.ac (modified) * trunk/doc/Makefile.am (modified) * trunk/doc/Statistics.doxygen (modified) * trunk/doc/build_tool.doxygen (modified) * trunk/doc/concepts.doxygen (modified) * trunk/doc/doxygen.config.in (modified) * trunk/doc/namespaces.doxygen (modified) * trunk/m4/yat.m4 (modified) * trunk/test/README (modified) * trunk/test/Suite.cc (modified) * trunk/test/Suite.h (modified) * trunk/test/consensus_inputranker_test.cc (modified) * trunk/test/crossvalidation_test.cc (modified) * trunk/test/data_lookup_1d_test.cc (modified) * trunk/test/data_weight_test.cc (modified) * trunk/test/documentation_test.sh.in (modified) * trunk/test/ensemble_test.cc (modified) * trunk/test/environment.h.in (modified) * trunk/test/feature_selection_test.cc (modified) * trunk/test/fileutil_test.cc (modified) * trunk/test/fisher_test.cc (modified) * trunk/test/index_test.cc (modified) * trunk/test/inputranker_test.cc (modified) * trunk/test/iterator_test.cc (modified) * trunk/test/kernel_lookup_test.cc (modified) * trunk/test/knn_test.cc (modified) * trunk/test/large_file_test.cc (modified) * trunk/test/matrix_lookup_test.cc (modified) * trunk/test/matrix_lookup_weighted_test.cc (modified) * trunk/test/matrix_weighted_test.cc (modified) * trunk/test/nbc_test.cc (modified) * trunk/test/ncc_test.cc (modified) * trunk/test/nni_test.cc (modified) * trunk/test/normalization_test.cc (modified) * trunk/test/range_test.cc (modified) * trunk/test/regression_test.cc (modified) * trunk/test/rnd_test.cc (modified) * trunk/test/roc_test.cc (modified) * trunk/test/score_test.cc (modified) * trunk/test/smart_ptr_test.cc (modified) * trunk/test/statistics_test.cc (modified) * trunk/test/svd_test.cc (modified) * trunk/test/svm_test.cc (modified) * trunk/test/target_test.cc (modified) * trunk/test/ttest_test.cc (modified) * trunk/test/utility_test.cc (modified) * trunk/test/vector_test.cc (modified) * trunk/test/version_test.cc (modified) * trunk/test/view_test.cc (modified) * trunk/yat/classifier/BootstrapSampler.cc (modified) * trunk/yat/classifier/BootstrapSampler.h (modified) * trunk/yat/classifier/ConsensusInputRanker.cc (modified) * trunk/yat/classifier/ConsensusInputRanker.h (modified) * trunk/yat/classifier/CrossValidationSampler.cc (modified) * trunk/yat/classifier/CrossValidationSampler.h (modified) * trunk/yat/classifier/DataLookup1D.cc (modified) * trunk/yat/classifier/DataLookup1D.h (modified) * trunk/yat/classifier/DataLookupWeighted1D.cc (modified) * trunk/yat/classifier/DataLookupWeighted1D.h (modified) * trunk/yat/classifier/FeatureSelector.cc (modified) * trunk/yat/classifier/FeatureSelector.h (modified) * trunk/yat/classifier/FeatureSelectorIR.cc (modified) * trunk/yat/classifier/FeatureSelectorIR.h (modified) * trunk/yat/classifier/FeatureSelectorRandom.cc (modified) * trunk/yat/classifier/FeatureSelectorRandom.h (modified) * trunk/yat/classifier/GaussianKernelFunction.cc (modified) * trunk/yat/classifier/GaussianKernelFunction.h (modified) * trunk/yat/classifier/IGP.h (modified) * trunk/yat/classifier/IRRank.h (modified) * trunk/yat/classifier/IRRetrieve.h (modified) * trunk/yat/classifier/InputRanker.cc (modified) * trunk/yat/classifier/InputRanker.h (modified) * trunk/yat/classifier/KNN_ReciprocalDistance.cc (modified) * trunk/yat/classifier/KNN_ReciprocalDistance.h (modified) * trunk/yat/classifier/KNN_ReciprocalRank.cc (modified) * trunk/yat/classifier/KNN_ReciprocalRank.h (modified) * trunk/yat/classifier/KNN_Uniform.cc (modified) * trunk/yat/classifier/KNN_Uniform.h (modified) * trunk/yat/classifier/Kernel.cc (modified) * trunk/yat/classifier/KernelFunction.h (modified) * trunk/yat/classifier/KernelLookup.cc (modified) * trunk/yat/classifier/KernelLookup.h (modified) * trunk/yat/classifier/Kernel_MEV.cc (modified) * trunk/yat/classifier/Kernel_MEV.h (modified) * trunk/yat/classifier/Kernel_SEV.h (modified) * trunk/yat/classifier/MatrixLookup.cc (modified) * trunk/yat/classifier/MatrixLookup.h (modified) * trunk/yat/classifier/MatrixLookupWeighted.cc (modified) * trunk/yat/classifier/MatrixLookupWeighted.h (modified) * trunk/yat/classifier/NBC.cc (modified) * trunk/yat/classifier/NBC.h (modified) * trunk/yat/classifier/PolynomialKernelFunction.cc (modified) * trunk/yat/classifier/PolynomialKernelFunction.h (modified) * trunk/yat/classifier/SVM.h (modified) * trunk/yat/classifier/SVindex.cc (modified) * trunk/yat/classifier/SVindex.h (modified) * trunk/yat/classifier/Sampler.cc (modified) * trunk/yat/classifier/Sampler.h (modified) * trunk/yat/classifier/SupervisedClassifier.cc (modified) * trunk/yat/classifier/SupervisedClassifier.h (modified) * trunk/yat/classifier/Target.cc (modified) * trunk/yat/classifier/Target.h (modified) * trunk/yat/classifier/utility.cc (modified) * trunk/yat/classifier/utility.h (modified) * trunk/yat/normalizer/Centralizer.h (modified) * trunk/yat/normalizer/ColumnNormalizer.h (modified) * trunk/yat/normalizer/Gauss.h (modified) * trunk/yat/normalizer/Makefile.am (modified) * trunk/yat/normalizer/QuantileNormalizer.cc (modified) * trunk/yat/normalizer/QuantileNormalizer.h (modified) * trunk/yat/normalizer/RowNormalizer.h (modified) * trunk/yat/normalizer/Spearman.h (modified) * trunk/yat/normalizer/Zscore.h (modified) * trunk/yat/normalizer/qQuantileNormalizer.cc (modified) * trunk/yat/normalizer/qQuantileNormalizer.h (modified) * trunk/yat/random/Makefile.am (modified) * trunk/yat/random/random.cc (modified) * trunk/yat/random/random.h (modified) * trunk/yat/regression/AkimaInterpolation.cc (modified) * trunk/yat/regression/AkimaInterpolation.h (modified) * trunk/yat/regression/AkimaPeriodicInterpolation.cc (modified) * trunk/yat/regression/AkimaPeriodicInterpolation.h (modified) * trunk/yat/regression/CSplineInterpolation.cc (modified) * trunk/yat/regression/CSplineInterpolation.h (modified) * trunk/yat/regression/CSplinePeriodicInterpolation.cc (modified) * trunk/yat/regression/CSplinePeriodicInterpolation.h (modified) * trunk/yat/regression/GSLInterpolation.cc (modified) * trunk/yat/regression/GSLInterpolation.h (modified) * trunk/yat/regression/Kernel.h (modified) * trunk/yat/regression/KernelBox.cc (modified) * trunk/yat/regression/KernelBox.h (modified) * trunk/yat/regression/KernelTriCube.cc (modified) * trunk/yat/regression/KernelTriCube.h (modified) * trunk/yat/regression/Linear.cc (modified) * trunk/yat/regression/Linear.h (modified) * trunk/yat/regression/LinearInterpolation.cc (modified) * trunk/yat/regression/LinearInterpolation.h (modified) * trunk/yat/regression/LinearWeighted.cc (modified) * trunk/yat/regression/LinearWeighted.h (modified) * trunk/yat/regression/Local.cc (modified) * trunk/yat/regression/Local.h (modified) * trunk/yat/regression/Makefile.am (modified) * trunk/yat/regression/MultiDimensional.h (modified) * trunk/yat/regression/MultiDimensionalWeighted.h (modified) * trunk/yat/regression/Naive.cc (modified) * trunk/yat/regression/Naive.h (modified) * trunk/yat/regression/NaiveWeighted.cc (modified) * trunk/yat/regression/NaiveWeighted.h (modified) * trunk/yat/regression/OneDimensional.cc (modified) * trunk/yat/regression/OneDimensional.h (modified) * trunk/yat/regression/OneDimensionalWeighted.cc (modified) * trunk/yat/regression/OneDimensionalWeighted.h (modified) * trunk/yat/regression/Polynomial.cc (modified) * trunk/yat/regression/Polynomial.h (modified) * trunk/yat/regression/PolynomialInterpolation.cc (modified) * trunk/yat/regression/PolynomialInterpolation.h (modified) * trunk/yat/regression/PolynomialWeighted.cc (modified) * trunk/yat/regression/PolynomialWeighted.h (modified) * trunk/yat/statistics/AUC.cc (modified) * trunk/yat/statistics/AUC.h (modified) * trunk/yat/statistics/Average.h (modified) * trunk/yat/statistics/AveragerPairWeighted.cc (modified) * trunk/yat/statistics/AveragerPairWeighted.h (modified) * trunk/yat/statistics/AveragerWeighted.cc (modified) * trunk/yat/statistics/AveragerWeighted.h (modified) * trunk/yat/statistics/EuclideanDistance.h (modified) * trunk/yat/statistics/Fisher.cc (modified) * trunk/yat/statistics/Fisher.h (modified) * trunk/yat/statistics/FoldChange.cc (modified) * trunk/yat/statistics/FoldChange.h (modified) * trunk/yat/statistics/Histogram.cc (modified) * trunk/yat/statistics/Histogram.h (modified) * trunk/yat/statistics/KolmogorovSmirnov.cc (modified) * trunk/yat/statistics/KolmogorovSmirnov.h (modified) * trunk/yat/statistics/Makefile.am (modified) * trunk/yat/statistics/Pearson.cc (modified) * trunk/yat/statistics/Pearson.h (modified) * trunk/yat/statistics/PearsonCorrelation.cc (modified) * trunk/yat/statistics/PearsonCorrelation.h (modified) * trunk/yat/statistics/PearsonDistance.h (modified) * trunk/yat/statistics/Percentiler.cc (modified) * trunk/yat/statistics/Percentiler.h (modified) * trunk/yat/statistics/ROC.cc (modified) * trunk/yat/statistics/SAMScore.cc (modified) * trunk/yat/statistics/SAMScore.h (modified) * trunk/yat/statistics/SNRScore.cc (modified) * trunk/yat/statistics/SNRScore.h (modified) * trunk/yat/statistics/Score.cc (modified) * trunk/yat/statistics/Score.h (modified) * trunk/yat/statistics/Smoother.cc (modified) * trunk/yat/statistics/Smoother.h (modified) * trunk/yat/statistics/VectorFunction.cc (modified) * trunk/yat/statistics/WilcoxonFoldChange.cc (modified) * trunk/yat/statistics/WilcoxonFoldChange.h (modified) * trunk/yat/statistics/averager_traits.h (modified) * trunk/yat/statistics/tScore.cc (modified) * trunk/yat/statistics/tScore.h (modified) * trunk/yat/statistics/tTest.cc (modified) * trunk/yat/statistics/tTest.h (modified) * trunk/yat/statistics/utility.cc (modified) * trunk/yat/statistics/utility.h (modified) * trunk/yat/utility/Alignment.cc (modified) * trunk/yat/utility/Alignment.h (modified) * trunk/yat/utility/ColumnStream.cc (modified) * trunk/yat/utility/ColumnStream.h (modified) * trunk/yat/utility/CommandLine.cc (modified) * trunk/yat/utility/CommandLine.h (modified) * trunk/yat/utility/Container2DIterator.h (modified) * trunk/yat/utility/DataIterator.h (modified) * trunk/yat/utility/DataWeight.cc (modified) * trunk/yat/utility/DataWeight.h (modified) * trunk/yat/utility/DataWeightProxy.h (modified) * trunk/yat/utility/Exception.h (modified) * trunk/yat/utility/FileUtil.h (modified) * trunk/yat/utility/Index.cc (modified) * trunk/yat/utility/Index.h (modified) * trunk/yat/utility/Makefile.am (modified) * trunk/yat/utility/Matrix.cc (modified) * trunk/yat/utility/Matrix.h (modified) * trunk/yat/utility/NNI.cc (modified) * trunk/yat/utility/NNI.h (modified) * trunk/yat/utility/Option.cc (modified) * trunk/yat/utility/Option.h (modified) * trunk/yat/utility/OptionArg.h (modified) * trunk/yat/utility/OptionFile.cc (modified) * trunk/yat/utility/OptionFile.h (modified) * trunk/yat/utility/OptionHelp.cc (modified) * trunk/yat/utility/OptionHelp.h (modified) * trunk/yat/utility/OptionInFile.cc (modified) * trunk/yat/utility/OptionInFile.h (modified) * trunk/yat/utility/OptionOutFile.cc (modified) * trunk/yat/utility/OptionOutFile.h (modified) * trunk/yat/utility/OptionSwitch.cc (modified) * trunk/yat/utility/OptionSwitch.h (modified) * trunk/yat/utility/PCA.h (modified) * trunk/yat/utility/Range.h (modified) * trunk/yat/utility/SVD.cc (modified) * trunk/yat/utility/SVD.h (modified) * trunk/yat/utility/StrideIterator.h (modified) * trunk/yat/utility/TypeInfo.cc (modified) * trunk/yat/utility/TypeInfo.h (modified) * trunk/yat/utility/Vector.cc (modified) * trunk/yat/utility/Vector.h (modified) * trunk/yat/utility/VectorBase.cc (modified) * trunk/yat/utility/VectorBase.h (modified) * trunk/yat/utility/VectorConstView.cc (modified) * trunk/yat/utility/VectorConstView.h (modified) * trunk/yat/utility/VectorMutable.cc (modified) * trunk/yat/utility/VectorMutable.h (modified) * trunk/yat/utility/VectorView.cc (modified) * trunk/yat/utility/VectorView.h (modified) * trunk/yat/utility/WeNNI.h (modified) * trunk/yat/utility/WeightIterator.h (modified) * trunk/yat/utility/config_public.h.in (modified) * trunk/yat/utility/iterator_traits.h (modified) * trunk/yat/utility/kNNI.h (modified) * trunk/yat/utility/stl_utility.cc (modified) * trunk/yat/utility/stl_utility.h (modified) * trunk/yat/utility/utility.cc (modified) * trunk/yat/utility/utility.h (modified) * trunk/yat/utility/version.cc (modified) * trunk/yat/utility/version.h.in (modified) * trunk/yat/utility/yat_assert.h (modified) updating copyright statements Fri, 30 Jan 2009 20:08:51 GMT Peter [1760] * trunk/yat/utility/config_public.h.in (modified) @configure_input@ not needed for files created with AC_CONFIG_HEADER Mon, 15 Sep 2008 18:47:37 GMT Peter [1500] * trunk/configure.ac (modified) * trunk/doc/build_tool.doxygen (modified) * trunk/test/statistics_test.cc (modified) * trunk/test/utility_test.cc (modified) * trunk/yat/classifier/Target.h (modified) * trunk/yat/statistics/utility.h (modified) * trunk/yat/utility/Makefile.am (modified) * trunk/yat/utility/config_public.h.in (copied) * trunk/yat/utility/deprecate.h (added) * trunk/yat/utility/utility.h (modified) Added structure to deprecate functions. I chose to use a gcc style, ... Wed, 10 Sep 2008 08:41:36 GMT Jari Häkkinen [1487] * trunk/AUTHORS (modified) * trunk/ChangeLog (modified) * trunk/Makefile.am (modified) * trunk/NEWS (modified) * trunk/README (modified) * trunk/README.developer (modified) * trunk/TODO (modified) * trunk/bootstrap (modified) * trunk/build_support/version.m4 (modified) * trunk/build_support/yat-config.in (modified) * trunk/build_support/yat.am (modified) * trunk/build_support/yat.m4 (modified) * trunk/build_support/yat.pc.in (modified) * trunk/configure.ac (modified) * trunk/doc/Makefile.am (modified) * trunk/doc/Statistics.doxygen (modified) * trunk/doc/build_tool.doxygen (modified) * trunk/doc/concepts.doxygen (modified) * trunk/doc/doxygen.config.in (modified) * trunk/doc/first_page.doxygen.in (modified) * trunk/doc/namespaces.doxygen (modified) * trunk/test/Makefile.am (modified) * trunk/test/README (modified) * trunk/test/Suite.cc (modified) * trunk/test/Suite.h (modified) * trunk/test/alignment_test.cc (modified) * trunk/test/averager_test.cc (modified) * trunk/test/commandline_test.cc (modified) * trunk/test/consensus_inputranker_test.cc (modified) * trunk/test/crossvalidation_test.cc (modified) * trunk/test/data/Makefile.am (modified) * trunk/test/data_lookup_1d_test.cc (modified) * trunk/test/data_weight_test.cc (modified) * trunk/test/distance_test.cc (modified) * trunk/test/documentation_test.sh.in (modified) * trunk/test/ensemble_test.cc (modified) * trunk/test/environment.h.in (modified) * trunk/test/feature_selection_test.cc (modified) * trunk/test/fileutil_test.cc (modified) * trunk/test/index_test.cc (modified) * trunk/test/inputranker_test.cc (modified) * trunk/test/iterator_test.cc (modified) * trunk/test/kernel_lookup_test.cc (modified) * trunk/test/kernel_test.cc (modified) * trunk/test/knn_test.cc (modified) * trunk/test/large_file_test.cc (modified) * trunk/test/matrix_lookup_test.cc (modified) * trunk/test/matrix_test.cc (modified) * trunk/test/matrix_weighted_test.cc (modified) * trunk/test/nbc_test.cc (modified) * trunk/test/ncc_test.cc (modified) * trunk/test/nni_test.cc (modified) * trunk/test/normalization_test.cc (modified) * trunk/test/pca_test.cc (modified) * trunk/test/range_test.cc (modified) * trunk/test/regression_test.cc (modified) * trunk/test/rnd_test.cc (modified) * trunk/test/roc_test.cc (modified) * trunk/test/score_test.cc (modified) * trunk/test/smart_ptr_test.cc (modified) * trunk/test/statistics_test.cc (modified) * trunk/test/subset_generator_test.cc (modified) * trunk/test/svd_test.cc (modified) * trunk/test/svm_test.cc (modified) * trunk/test/target_test.cc (modified) * trunk/test/ttest_test.cc (modified) * trunk/test/utility_test.cc (modified) * trunk/test/vector_test.cc (modified) * trunk/test/version_test.cc (modified) * trunk/test/view_test.cc (modified) * trunk/yat/Makefile.am (modified) * trunk/yat/classifier/BootstrapSampler.cc (modified) * trunk/yat/classifier/BootstrapSampler.h (modified) * trunk/yat/classifier/ConsensusInputRanker.cc (modified) * trunk/yat/classifier/ConsensusInputRanker.h (modified) * trunk/yat/classifier/CrossValidationSampler.cc (modified) * trunk/yat/classifier/CrossValidationSampler.h (modified) * trunk/yat/classifier/DataLookup1D.cc (modified) * trunk/yat/classifier/DataLookup1D.h (modified) * trunk/yat/classifier/DataLookupWeighted1D.cc (modified) * trunk/yat/classifier/DataLookupWeighted1D.h (modified) * trunk/yat/classifier/EnsembleBuilder.h (modified) * trunk/yat/classifier/FeatureSelector.cc (modified) * trunk/yat/classifier/FeatureSelector.h (modified) * trunk/yat/classifier/FeatureSelectorIR.cc (modified) * trunk/yat/classifier/FeatureSelectorIR.h (modified) * trunk/yat/classifier/FeatureSelectorRandom.cc (modified) * trunk/yat/classifier/FeatureSelectorRandom.h (modified) * trunk/yat/classifier/GaussianKernelFunction.cc (modified) * trunk/yat/classifier/GaussianKernelFunction.h (modified) * trunk/yat/classifier/IGP.h (modified) * trunk/yat/classifier/IRRank.h (modified) * trunk/yat/classifier/IRRetrieve.h (modified) * trunk/yat/classifier/InputRanker.cc (modified) * trunk/yat/classifier/InputRanker.h (modified) * trunk/yat/classifier/KNN.h (modified) * trunk/yat/classifier/KNN_ReciprocalDistance.cc (modified) * trunk/yat/classifier/KNN_ReciprocalDistance.h (modified) * trunk/yat/classifier/KNN_ReciprocalRank.cc (modified) * trunk/yat/classifier/KNN_ReciprocalRank.h (modified) * trunk/yat/classifier/KNN_Uniform.cc (modified) * trunk/yat/classifier/KNN_Uniform.h (modified) * trunk/yat/classifier/Kernel.cc (modified) * trunk/yat/classifier/Kernel.h (modified) * trunk/yat/classifier/KernelFunction.h (modified) * trunk/yat/classifier/KernelLookup.cc (modified) * trunk/yat/classifier/KernelLookup.h (modified) * trunk/yat/classifier/Kernel_MEV.cc (modified) * trunk/yat/classifier/Kernel_MEV.h (modified) * trunk/yat/classifier/Kernel_SEV.cc (modified) * trunk/yat/classifier/Kernel_SEV.h (modified) * trunk/yat/classifier/Makefile.am (modified) * trunk/yat/classifier/MatrixLookup.cc (modified) * trunk/yat/classifier/MatrixLookup.h (modified) * trunk/yat/classifier/MatrixLookupWeighted.cc (modified) * trunk/yat/classifier/MatrixLookupWeighted.h (modified) * trunk/yat/classifier/NBC.cc (modified) * trunk/yat/classifier/NBC.h (modified) * trunk/yat/classifier/NCC.h (modified) * trunk/yat/classifier/PolynomialKernelFunction.cc (modified) * trunk/yat/classifier/PolynomialKernelFunction.h (modified) * trunk/yat/classifier/SVM.cc (modified) * trunk/yat/classifier/SVM.h (modified) * trunk/yat/classifier/SVindex.cc (modified) * trunk/yat/classifier/SVindex.h (modified) * trunk/yat/classifier/Sampler.cc (modified) * trunk/yat/classifier/Sampler.h (modified) * trunk/yat/classifier/SubsetGenerator.h (modified) * trunk/yat/classifier/SupervisedClassifier.cc (modified) * trunk/yat/classifier/SupervisedClassifier.h (modified) * trunk/yat/classifier/Target.cc (modified) * trunk/yat/classifier/Target.h (modified) * trunk/yat/classifier/utility.cc (modified) * trunk/yat/classifier/utility.h (modified) * trunk/yat/normalization/Centralizer.h (modified) * trunk/yat/normalization/ColumnNormalizer.h (modified) * trunk/yat/normalization/Makefile.am (modified) * trunk/yat/normalization/QuantileNormalizer.cc (modified) * trunk/yat/normalization/QuantileNormalizer.h (modified) * trunk/yat/random/Makefile.am (modified) * trunk/yat/random/random.cc (modified) * trunk/yat/random/random.h (modified) * trunk/yat/regression/Kernel.h (modified) * trunk/yat/regression/KernelBox.cc (modified) * trunk/yat/regression/KernelBox.h (modified) * trunk/yat/regression/KernelTriCube.cc (modified) * trunk/yat/regression/KernelTriCube.h (modified) * trunk/yat/regression/Linear.cc (modified) * trunk/yat/regression/Linear.h (modified) * trunk/yat/regression/LinearWeighted.cc (modified) * trunk/yat/regression/LinearWeighted.h (modified) * trunk/yat/regression/Local.cc (modified) * trunk/yat/regression/Local.h (modified) * trunk/yat/regression/Makefile.am (modified) * trunk/yat/regression/MultiDimensional.cc (modified) * trunk/yat/regression/MultiDimensional.h (modified) * trunk/yat/regression/MultiDimensionalWeighted.cc (modified) * trunk/yat/regression/MultiDimensionalWeighted.h (modified) * trunk/yat/regression/Naive.cc (modified) * trunk/yat/regression/Naive.h (modified) * trunk/yat/regression/NaiveWeighted.cc (modified) * trunk/yat/regression/NaiveWeighted.h (modified) * trunk/yat/regression/OneDimensional.cc (modified) * trunk/yat/regression/OneDimensional.h (modified) * trunk/yat/regression/OneDimensionalWeighted.cc (modified) * trunk/yat/regression/OneDimensionalWeighted.h (modified) * trunk/yat/regression/Polynomial.cc (modified) * trunk/yat/regression/Polynomial.h (modified) * trunk/yat/regression/PolynomialWeighted.cc (modified) * trunk/yat/regression/PolynomialWeighted.h (modified) * trunk/yat/statistics/AUC.cc (modified) * trunk/yat/statistics/AUC.h (modified) * trunk/yat/statistics/Average.h (modified) * trunk/yat/statistics/Averager.cc (modified) * trunk/yat/statistics/Averager.h (modified) * trunk/yat/statistics/AveragerPair.cc (modified) * trunk/yat/statistics/AveragerPair.h (modified) * trunk/yat/statistics/AveragerPairWeighted.cc (modified) * trunk/yat/statistics/AveragerPairWeighted.h (modified) * trunk/yat/statistics/AveragerWeighted.cc (modified) * trunk/yat/statistics/AveragerWeighted.h (modified) * trunk/yat/statistics/EuclideanDistance.h (modified) * trunk/yat/statistics/Fisher.cc (modified) * trunk/yat/statistics/Fisher.h (modified) * trunk/yat/statistics/FoldChange.cc (modified) * trunk/yat/statistics/FoldChange.h (modified) * trunk/yat/statistics/Histogram.cc (modified) * trunk/yat/statistics/Histogram.h (modified) * trunk/yat/statistics/KolmogorovSmirnov.cc (modified) * trunk/yat/statistics/KolmogorovSmirnov.h (modified) * trunk/yat/statistics/Makefile.am (modified) * trunk/yat/statistics/Pearson.cc (modified) * trunk/yat/statistics/Pearson.h (modified) * trunk/yat/statistics/PearsonCorrelation.cc (modified) * trunk/yat/statistics/PearsonCorrelation.h (modified) * trunk/yat/statistics/PearsonDistance.h (modified) * trunk/yat/statistics/Percentiler.cc (modified) * trunk/yat/statistics/Percentiler.h (modified) * trunk/yat/statistics/ROC.cc (modified) * trunk/yat/statistics/ROC.h (modified) * trunk/yat/statistics/SAMScore.cc (modified) * trunk/yat/statistics/SAMScore.h (modified) * trunk/yat/statistics/SNRScore.cc (modified) * trunk/yat/statistics/SNRScore.h (modified) * trunk/yat/statistics/Score.cc (modified) * trunk/yat/statistics/Score.h (modified) * trunk/yat/statistics/Smoother.cc (modified) * trunk/yat/statistics/Smoother.h (modified) * trunk/yat/statistics/VectorFunction.cc (modified) * trunk/yat/statistics/VectorFunction.h (modified) * trunk/yat/statistics/WilcoxonFoldChange.cc (modified) * trunk/yat/statistics/WilcoxonFoldChange.h (modified) * trunk/yat/statistics/averager_traits.h (modified) * trunk/yat/statistics/tScore.cc (modified) * trunk/yat/statistics/tScore.h (modified) * trunk/yat/statistics/tTest.cc (modified) * trunk/yat/statistics/tTest.h (modified) * trunk/yat/statistics/utility.cc (modified) * trunk/yat/statistics/utility.h (modified) * trunk/yat/utility/Alignment.cc (modified) * trunk/yat/utility/Alignment.h (modified) * trunk/yat/utility/ColumnStream.cc (modified) * trunk/yat/utility/ColumnStream.h (modified) * trunk/yat/utility/CommandLine.cc (modified) * trunk/yat/utility/CommandLine.h (modified) * trunk/yat/utility/Container2DIterator.h (modified) * trunk/yat/utility/DataIterator.h (modified) * trunk/yat/utility/DataWeight.cc (modified) * trunk/yat/utility/DataWeight.h (modified) * trunk/yat/utility/Exception.h (modified) * trunk/yat/utility/FileUtil.cc (modified) * trunk/yat/utility/FileUtil.h (modified) * trunk/yat/utility/Index.cc (modified) * trunk/yat/utility/Index.h (modified) * trunk/yat/utility/IteratorPolicy.h (modified) * trunk/yat/utility/Makefile.am (modified) * trunk/yat/utility/Matrix.cc (modified) * trunk/yat/utility/Matrix.h (modified) * trunk/yat/utility/MatrixWeighted.cc (modified) * trunk/yat/utility/MatrixWeighted.h (modified) * trunk/yat/utility/NNI.cc (modified) * trunk/yat/utility/NNI.h (modified) * trunk/yat/utility/Option.cc (modified) * trunk/yat/utility/Option.h (modified) * trunk/yat/utility/OptionArg.h (modified) * trunk/yat/utility/OptionFile.cc (modified) * trunk/yat/utility/OptionFile.h (modified) * trunk/yat/utility/OptionHelp.cc (modified) * trunk/yat/utility/OptionHelp.h (modified) * trunk/yat/utility/OptionInFile.cc (modified) * trunk/yat/utility/OptionInFile.h (modified) * trunk/yat/utility/OptionOutFile.cc (modified) * trunk/yat/utility/OptionOutFile.h (modified) * trunk/yat/utility/OptionSwitch.cc (modified) * trunk/yat/utility/OptionSwitch.h (modified) * trunk/yat/utility/PCA.cc (modified) * trunk/yat/utility/PCA.h (modified) * trunk/yat/utility/Range.h (modified) * trunk/yat/utility/SVD.cc (modified) * trunk/yat/utility/SVD.h (modified) * trunk/yat/utility/SmartPtr.h (modified) * trunk/yat/utility/StrideIterator.h (modified) * trunk/yat/utility/TypeInfo.cc (modified) * trunk/yat/utility/TypeInfo.h (modified) * trunk/yat/utility/Vector.cc (modified) * trunk/yat/utility/Vector.h (modified) * trunk/yat/utility/VectorBase.cc (modified) * trunk/yat/utility/VectorBase.h (modified) * trunk/yat/utility/VectorConstView.cc (modified) * trunk/yat/utility/VectorConstView.h (modified) * trunk/yat/utility/VectorMutable.cc (modified) * trunk/yat/utility/VectorMutable.h (modified) * trunk/yat/utility/VectorView.cc (modified) * trunk/yat/utility/VectorView.h (modified) * trunk/yat/utility/WeNNI.cc (modified) * trunk/yat/utility/WeNNI.h (modified) * trunk/yat/utility/WeightIterator.h (modified) * trunk/yat/utility/iterator_traits.h (modified) * trunk/yat/utility/kNNI.cc (modified) * trunk/yat/utility/kNNI.h (modified) * trunk/yat/utility/stl_utility.cc (modified) * trunk/yat/utility/stl_utility.h (modified) * trunk/yat/utility/utility.cc (modified) * trunk/yat/utility/utility.h (modified) * trunk/yat/utility/version.cc (modified) * trunk/yat/utility/version.h.in (modified) * trunk/yat/utility/yat_assert.h (modified) Addresses #436. GPL license copy reference should also be updated.